Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MSANTD3-TMEFF1 (MSANTD3-TMEFF1 readthrough)

Identity

Alias_namesC9orf30-TMEFF1
C9orf30-TMEFF1 readthrough
Other aliasC9orf3-TMEFF1
HGNC (Hugo) MSANTD3-TMEFF1
LocusID (NCBI) 100526694
Atlas_Id 70515
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 100441906 and ends at 100577636 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MSANTD3-TMEFF1 (9q31.1) / MURC (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSANTD3-TMEFF1   38838
Cards
Entrez_Gene (NCBI)MSANTD3-TMEFF1  100526694  MSANTD3-TMEFF1 readthrough
AliasesC9orf3-TMEFF1; C9orf30-TMEFF1
GeneCards (Weizmann)MSANTD3-TMEFF1
Ensembl hg19 (Hinxton)ENSG00000251349 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251349 [Gene_View]  chr9:100441906-100577636 [Contig_View]  MSANTD3-TMEFF1 [Vega]
ICGC DataPortalENSG00000251349
TCGA cBioPortalMSANTD3-TMEFF1
AceView (NCBI)MSANTD3-TMEFF1
Genatlas (Paris)MSANTD3-TMEFF1
WikiGenes100526694
SOURCE (Princeton)MSANTD3-TMEFF1
Genetics Home Reference (NIH)MSANTD3-TMEFF1
Genomic and cartography
GoldenPath hg38 (UCSC)MSANTD3-TMEFF1  -     chr9:100441906-100577636 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSANTD3-TMEFF1  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblMSANTD3-TMEFF1 - 9q31.1 [CytoView hg19]  MSANTD3-TMEFF1 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIMSANTD3-TMEFF1 [Mapview hg19]  MSANTD3-TMEFF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL831919
RefSeq transcript (Entrez)NM_001198812
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MSANTD3-TMEFF1
Cluster EST : UnigeneHs.598100 [ NCBI ]
CGAP (NCI)Hs.598100
Alternative Splicing GalleryENSG00000251349
Gene ExpressionMSANTD3-TMEFF1 [ NCBI-GEO ]   MSANTD3-TMEFF1 [ EBI - ARRAY_EXPRESS ]   MSANTD3-TMEFF1 [ SEEK ]   MSANTD3-TMEFF1 [ MEM ]
Gene Expression Viewer (FireBrowse)MSANTD3-TMEFF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100526694
GTEX Portal (Tissue expression)MSANTD3-TMEFF1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MSANTD3-TMEFF1
DMDM Disease mutations100526694
Blocks (Seattle)MSANTD3-TMEFF1
Human Protein AtlasENSG00000251349
Protein Interaction databases
FunCoupENSG00000251349
BioGRIDMSANTD3-TMEFF1
STRING (EMBL)MSANTD3-TMEFF1
ZODIACMSANTD3-TMEFF1
Ontologies - Pathways
Huge Navigator MSANTD3-TMEFF1 [HugePedia]
snp3D : Map Gene to Disease100526694
BioCentury BCIQMSANTD3-TMEFF1
ClinGenMSANTD3-TMEFF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100526694
Clinical trialMSANTD3-TMEFF1
Miscellaneous
canSAR (ICR)MSANTD3-TMEFF1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSANTD3-TMEFF1
EVEXMSANTD3-TMEFF1
GoPubMedMSANTD3-TMEFF1
iHOPMSANTD3-TMEFF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:31:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.