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MSANTD4 (Myb/SANT DNA binding domain containing 4 with coiled-coils)

Identity

Alias_namesKIAA1826
KIAA1826
Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
Other alias
HGNC (Hugo) MSANTD4
LocusID (NCBI) 84437
Atlas_Id 70516
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 106007921 and ends at 106022287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MSANTD4 (11q22.3) / VPS37A (8p22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSANTD4   29383
Cards
Entrez_Gene (NCBI)MSANTD4  84437  Myb/SANT DNA binding domain containing 4 with coiled-coils
AliasesKIAA1826
GeneCards (Weizmann)MSANTD4
Ensembl hg19 (Hinxton)ENSG00000170903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170903 [Gene_View]  chr11:106007921-106022287 [Contig_View]  MSANTD4 [Vega]
ICGC DataPortalENSG00000170903
TCGA cBioPortalMSANTD4
AceView (NCBI)MSANTD4
Genatlas (Paris)MSANTD4
WikiGenes84437
SOURCE (Princeton)MSANTD4
Genetics Home Reference (NIH)MSANTD4
Genomic and cartography
GoldenPath hg38 (UCSC)MSANTD4  -     chr11:106007921-106022287 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSANTD4  -     11q22.3   [Description]    (hg19-Feb_2009)
EnsemblMSANTD4 - 11q22.3 [CytoView hg19]  MSANTD4 - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBIMSANTD4 [Mapview hg19]  MSANTD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058729 AF253976 AI127319 AI399910 AK027790
RefSeq transcript (Entrez)NM_001318747 NM_001318748 NM_001318749 NM_001318750 NM_032424
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MSANTD4
Cluster EST : UnigeneHs.266782 [ NCBI ]
CGAP (NCI)Hs.266782
Alternative Splicing GalleryENSG00000170903
Gene ExpressionMSANTD4 [ NCBI-GEO ]   MSANTD4 [ EBI - ARRAY_EXPRESS ]   MSANTD4 [ SEEK ]   MSANTD4 [ MEM ]
Gene Expression Viewer (FireBrowse)MSANTD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84437
GTEX Portal (Tissue expression)MSANTD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCY6
Splice isoforms : SwissVarQ8NCY6
PhosPhoSitePlusQ8NCY6
Domains : Interpro (EBI)Homeobox-like    MSANTD4    Myb_DNA-bind_5   
Domain families : Pfam (Sanger)Myb_DNA-bind_5 (PF13873)   
Domain families : Pfam (NCBI)pfam13873   
Conserved Domain (NCBI)MSANTD4
DMDM Disease mutations84437
Blocks (Seattle)MSANTD4
SuperfamilyQ8NCY6
Human Protein AtlasENSG00000170903
Peptide AtlasQ8NCY6
HPRD11163
IPIIPI00022967   IPI00983589   IPI00985387   IPI00984267   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCY6
IntAct (EBI)Q8NCY6
FunCoupENSG00000170903
BioGRIDMSANTD4
STRING (EMBL)MSANTD4
ZODIACMSANTD4
Ontologies - Pathways
QuickGOQ8NCY6
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkMSANTD4
Atlas of Cancer Signalling NetworkMSANTD4
Wikipedia pathwaysMSANTD4
Orthology - Evolution
OrthoDB84437
GeneTree (enSembl)ENSG00000170903
Phylogenetic Trees/Animal Genes : TreeFamMSANTD4
HOVERGENQ8NCY6
HOGENOMQ8NCY6
Homologs : HomoloGeneMSANTD4
Homology/Alignments : Family Browser (UCSC)MSANTD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSANTD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSANTD4
dbVarMSANTD4
ClinVarMSANTD4
1000_GenomesMSANTD4 
Exome Variant ServerMSANTD4
ExAC (Exome Aggregation Consortium)MSANTD4 (select the gene name)
Genetic variants : HAPMAP84437
Genomic Variants (DGV)MSANTD4 [DGVbeta]
DECIPHERMSANTD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSANTD4 
Mutations
ICGC Data PortalMSANTD4 
TCGA Data PortalMSANTD4 
Broad Tumor PortalMSANTD4
OASIS PortalMSANTD4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMSANTD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MSANTD4
DgiDB (Drug Gene Interaction Database)MSANTD4
DoCM (Curated mutations)MSANTD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MSANTD4 (select a term)
intoGenMSANTD4
Cancer3DMSANTD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMSANTD4
Genetic Testing Registry MSANTD4
NextProtQ8NCY6 [Medical]
TSGene84437
GENETestsMSANTD4
Target ValidationMSANTD4
Huge Navigator MSANTD4 [HugePedia]
snp3D : Map Gene to Disease84437
BioCentury BCIQMSANTD4
ClinGenMSANTD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84437
Chemical/Pharm GKB GenePA143485519
Clinical trialMSANTD4
Miscellaneous
canSAR (ICR)MSANTD4 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSANTD4
EVEXMSANTD4
GoPubMedMSANTD4
iHOPMSANTD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:43 CEST 2017

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