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MSANTD4 (Myb/SANT DNA binding domain containing 4 with coiled-coils)

Identity

Alias (NCBI)KIAA1826
HGNC (Hugo) MSANTD4
HGNC Previous nameKIAA1826
HGNC Previous nameKIAA1826
 Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
LocusID (NCBI) 84437
Atlas_Id 70516
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 106007899 and ends at 106022240 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MSANTD4 (11q22.3) / VPS37A (8p22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MSANTD4   29383
Cards
Entrez_Gene (NCBI)MSANTD4    Myb/SANT DNA binding domain containing 4 with coiled-coils
AliasesKIAA1826
GeneCards (Weizmann)MSANTD4
Ensembl hg19 (Hinxton)ENSG00000170903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170903 [Gene_View]  ENSG00000170903 [Sequence]  chr11:106007899-106022240 [Contig_View]  MSANTD4 [Vega]
ICGC DataPortalENSG00000170903
TCGA cBioPortalMSANTD4
AceView (NCBI)MSANTD4
Genatlas (Paris)MSANTD4
SOURCE (Princeton)MSANTD4
Genetics Home Reference (NIH)MSANTD4
Genomic and cartography
GoldenPath hg38 (UCSC)MSANTD4  -     chr11:106007899-106022240 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSANTD4  -     11q22.3   [Description]    (hg19-Feb_2009)
GoldenPathMSANTD4 - 11q22.3 [CytoView hg19]  MSANTD4 - 11q22.3 [CytoView hg38]
ImmunoBaseENSG00000170903
Genome Data Viewer NCBIMSANTD4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB058729 AF253976 AI127319 AI399910 AK027790
RefSeq transcript (Entrez)NM_001318747 NM_001318748 NM_001318749 NM_001318750 NM_032424
Consensus coding sequences : CCDS (NCBI)MSANTD4
Gene ExpressionMSANTD4 [ NCBI-GEO ]   MSANTD4 [ EBI - ARRAY_EXPRESS ]   MSANTD4 [ SEEK ]   MSANTD4 [ MEM ]
Gene Expression Viewer (FireBrowse)MSANTD4 [ Firebrowse - Broad ]
GenevisibleExpression of MSANTD4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84437
GTEX Portal (Tissue expression)MSANTD4
Human Protein AtlasENSG00000170903-MSANTD4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCY6
PhosPhoSitePlusQ8NCY6
Domains : Interpro (EBI)MSANTD4    Myb_DNA-bind_5   
Domain families : Pfam (Sanger)Myb_DNA-bind_5 (PF13873)   
Domain families : Pfam (NCBI)pfam13873   
Conserved Domain (NCBI)MSANTD4
SuperfamilyQ8NCY6
AlphaFold pdb e-kbQ8NCY6   
Human Protein Atlas [tissue]ENSG00000170903-MSANTD4 [tissue]
HPRD11163
Protein Interaction databases
DIP (DOE-UCLA)Q8NCY6
IntAct (EBI)Q8NCY6
BioGRIDMSANTD4
STRING (EMBL)MSANTD4
ZODIACMSANTD4
Ontologies - Pathways
QuickGOQ8NCY6
Ontology : AmiGOprotein binding  nucleus  
Ontology : EGO-EBIprotein binding  nucleus  
NDEx NetworkMSANTD4
Atlas of Cancer Signalling NetworkMSANTD4
Wikipedia pathwaysMSANTD4
Orthology - Evolution
OrthoDB84437
GeneTree (enSembl)ENSG00000170903
Phylogenetic Trees/Animal Genes : TreeFamMSANTD4
Homologs : HomoloGeneMSANTD4
Homology/Alignments : Family Browser (UCSC)MSANTD4
Gene fusions - Rearrangements
Fusion : QuiverMSANTD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSANTD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSANTD4
dbVarMSANTD4
ClinVarMSANTD4
MonarchMSANTD4
1000_GenomesMSANTD4 
Exome Variant ServerMSANTD4
GNOMAD BrowserENSG00000170903
Varsome BrowserMSANTD4
ACMGMSANTD4 variants
VarityQ8NCY6
Genomic Variants (DGV)MSANTD4 [DGVbeta]
DECIPHERMSANTD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSANTD4 
Mutations
ICGC Data PortalMSANTD4 
TCGA Data PortalMSANTD4 
Broad Tumor PortalMSANTD4
OASIS PortalMSANTD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMSANTD4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMSANTD4
Mutations and Diseases : HGMDMSANTD4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMSANTD4
DgiDB (Drug Gene Interaction Database)MSANTD4
DoCM (Curated mutations)MSANTD4
CIViC (Clinical Interpretations of Variants in Cancer)MSANTD4
Cancer3DMSANTD4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMSANTD4
MedgenMSANTD4
Genetic Testing Registry MSANTD4
NextProtQ8NCY6 [Medical]
GENETestsMSANTD4
Target ValidationMSANTD4
Huge Navigator MSANTD4 [HugePedia]
ClinGenMSANTD4
Clinical trials, drugs, therapy
MyCancerGenomeMSANTD4
Protein Interactions : CTDMSANTD4
Pharm GKB GenePA143485519
PharosQ8NCY6
Clinical trialMSANTD4
Miscellaneous
canSAR (ICR)MSANTD4
HarmonizomeMSANTD4
DataMed IndexMSANTD4
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMSANTD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:11:52 CEST 2021

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