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MSGN1 (mesogenin 1)

Identity

Alias_symbol (synonym)pMesogenin1
Other aliasMSOG
HGNC (Hugo) MSGN1
LocusID (NCBI) 343930
Atlas_Id 50444
Location 2p24.2  [Link to chromosome band 2p24]
Location_base_pair Starts at 17997786 and ends at 17998367 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSGN1   14907
Cards
Entrez_Gene (NCBI)MSGN1  343930  mesogenin 1
AliasesMSOG
GeneCards (Weizmann)MSGN1
Ensembl hg19 (Hinxton)ENSG00000151379 [Gene_View]  chr2:17997786-17998367 [Contig_View]  MSGN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000151379 [Gene_View]  chr2:17997786-17998367 [Contig_View]  MSGN1 [Vega]
ICGC DataPortalENSG00000151379
TCGA cBioPortalMSGN1
AceView (NCBI)MSGN1
Genatlas (Paris)MSGN1
WikiGenes343930
SOURCE (Princeton)MSGN1
Genetics Home Reference (NIH)MSGN1
Genomic and cartography
GoldenPath hg19 (UCSC)MSGN1  -     chr2:17997786-17998367 +  2p24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MSGN1  -     2p24.2   [Description]    (hg38-Dec_2013)
EnsemblMSGN1 - 2p24.2 [CytoView hg19]  MSGN1 - 2p24.2 [CytoView hg38]
Mapping of homologs : NCBIMSGN1 [Mapview hg19]  MSGN1 [Mapview hg38]
OMIM612209   
Gene and transcription
Genbank (Entrez)BC172301
RefSeq transcript (Entrez)NM_001105569
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929299
Consensus coding sequences : CCDS (NCBI)MSGN1
Cluster EST : UnigeneHs.705359 [ NCBI ]
CGAP (NCI)Hs.705359
Alternative Splicing GalleryENSG00000151379
Gene ExpressionMSGN1 [ NCBI-GEO ]   MSGN1 [ EBI - ARRAY_EXPRESS ]   MSGN1 [ SEEK ]   MSGN1 [ MEM ]
Gene Expression Viewer (FireBrowse)MSGN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343930
GTEX Portal (Tissue expression)MSGN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NI15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NI15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NI15
Splice isoforms : SwissVarA6NI15
PhosPhoSitePlusA6NI15
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)MSGN1
DMDM Disease mutations343930
Blocks (Seattle)MSGN1
SuperfamilyA6NI15
Human Protein AtlasENSG00000151379
Peptide AtlasA6NI15
IPIIPI00247733   
Protein Interaction databases
DIP (DOE-UCLA)A6NI15
IntAct (EBI)A6NI15
FunCoupENSG00000151379
BioGRIDMSGN1
STRING (EMBL)MSGN1
ZODIACMSGN1
Ontologies - Pathways
QuickGOA6NI15
Ontology : AmiGOtranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  somitogenesis  DNA binding  chromatin binding  nucleus  transcription from RNA polymerase II promoter  segment specification  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  protein dimerization activity  
Ontology : EGO-EBItranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  somitogenesis  DNA binding  chromatin binding  nucleus  transcription from RNA polymerase II promoter  segment specification  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  protein dimerization activity  
NDEx NetworkMSGN1
Atlas of Cancer Signalling NetworkMSGN1
Wikipedia pathwaysMSGN1
Orthology - Evolution
OrthoDB343930
GeneTree (enSembl)ENSG00000151379
Phylogenetic Trees/Animal Genes : TreeFamMSGN1
HOVERGENA6NI15
HOGENOMA6NI15
Homologs : HomoloGeneMSGN1
Homology/Alignments : Family Browser (UCSC)MSGN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSGN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSGN1
dbVarMSGN1
ClinVarMSGN1
1000_GenomesMSGN1 
Exome Variant ServerMSGN1
ExAC (Exome Aggregation Consortium)MSGN1 (select the gene name)
Genetic variants : HAPMAP343930
Genomic Variants (DGV)MSGN1 [DGVbeta]
DECIPHER (Syndromes)2:17997786-17998367  ENSG00000151379
CONAN: Copy Number AnalysisMSGN1 
Mutations
ICGC Data PortalMSGN1 
TCGA Data PortalMSGN1 
Broad Tumor PortalMSGN1
OASIS PortalMSGN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMSGN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMSGN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MSGN1
DgiDB (Drug Gene Interaction Database)MSGN1
DoCM (Curated mutations)MSGN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MSGN1 (select a term)
intoGenMSGN1
Cancer3DMSGN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612209   
Orphanet
MedgenMSGN1
Genetic Testing Registry MSGN1
NextProtA6NI15 [Medical]
TSGene343930
GENETestsMSGN1
Huge Navigator MSGN1 [HugePedia]
snp3D : Map Gene to Disease343930
BioCentury BCIQMSGN1
ClinGenMSGN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343930
Chemical/Pharm GKB GenePA142671315
Clinical trialMSGN1
Miscellaneous
canSAR (ICR)MSGN1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSGN1
EVEXMSGN1
GoPubMedMSGN1
iHOPMSGN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:11:07 CEST 2017

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