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MSH5-SAPCD1 (MSH5-SAPCD1 readthrough (NMD candidate))

Identity

Alias (NCBI)MSH5-C6orf26
HGNC (Hugo) MSH5-SAPCD1
HGNC Previous nameMSH5-C6orf26
HGNC Previous nameMSH5-C6orf26 readthrough (non-protein coding)
LocusID (NCBI) 100532732
Atlas_Id 70517
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31739948 and ends at 31764847 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSH5-SAPCD1   41994
Cards
Entrez_Gene (NCBI)MSH5-SAPCD1  100532732  MSH5-SAPCD1 readthrough (NMD candidate)
AliasesMSH5-C6orf26
GeneCards (Weizmann)MSH5-SAPCD1
Ensembl hg19 (Hinxton)ENSG00000255152 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255152 [Gene_View]  ENSG00000255152 [Sequence]  chr6:31739948-31764847 [Contig_View]  MSH5-SAPCD1 [Vega]
ICGC DataPortalENSG00000255152
TCGA cBioPortalMSH5-SAPCD1
AceView (NCBI)MSH5-SAPCD1
Genatlas (Paris)MSH5-SAPCD1
WikiGenes100532732
SOURCE (Princeton)MSH5-SAPCD1
Genetics Home Reference (NIH)MSH5-SAPCD1
Genomic and cartography
GoldenPath hg38 (UCSC)MSH5-SAPCD1  -     chr6:31739948-31764847 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSH5-SAPCD1  -     6p21.33   [Description]    (hg19-Feb_2009)
GoldenPathMSH5-SAPCD1 - 6p21.33 [CytoView hg19]  MSH5-SAPCD1 - 6p21.33 [CytoView hg38]
ImmunoBaseENSG00000255152
genome Data Viewer NCBIMSH5-SAPCD1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ245661 AL122094
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)MSH5-SAPCD1
Alternative Splicing GalleryENSG00000255152
Gene ExpressionMSH5-SAPCD1 [ NCBI-GEO ]   MSH5-SAPCD1 [ EBI - ARRAY_EXPRESS ]   MSH5-SAPCD1 [ SEEK ]   MSH5-SAPCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)MSH5-SAPCD1 [ Firebrowse - Broad ]
GenevisibleExpression of MSH5-SAPCD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100532732
GTEX Portal (Tissue expression)MSH5-SAPCD1
Human Protein AtlasENSG00000255152-MSH5-SAPCD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MSH5-SAPCD1
DMDM Disease mutations100532732
Blocks (Seattle)MSH5-SAPCD1
Human Protein Atlas [tissue]ENSG00000255152-MSH5-SAPCD1 [tissue]
IPIIPI00219362   IPI00172593   IPI00297780   IPI00647584   IPI01015677   IPI00910563   IPI00941383   IPI01018965   IPI00793458   IPI00645968   IPI00978527   IPI00514483   IPI01018031   IPI01012152   IPI00893328   IPI00790547   IPI01012235   IPI00798222   IPI00797508   IPI00945445   IPI00894538   IPI00942932   IPI00892565   IPI00892945   IPI00973859   IPI00953074   IPI00892973   IPI00645315   IPI00945579   IPI01015991   IPI00946000   IPI01012070   IPI00981485   IPI00946818   IPI00983144   IPI00981952   IPI01021447   
Protein Interaction databases
FunCoupENSG00000255152
BioGRIDMSH5-SAPCD1
STRING (EMBL)MSH5-SAPCD1
ZODIACMSH5-SAPCD1
Ontologies - Pathways
Huge Navigator MSH5-SAPCD1 [HugePedia]
snp3D : Map Gene to Disease100532732
BioCentury BCIQMSH5-SAPCD1
ClinGenMSH5-SAPCD1
Clinical trials, drugs, therapy
Protein Interactions : CTD100532732
Clinical trialMSH5-SAPCD1
Miscellaneous
canSAR (ICR)MSH5-SAPCD1 (select the gene name)
HarmonizomeMSH5-SAPCD1
DataMed IndexMSH5-SAPCD1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSH5-SAPCD1
EVEXMSH5-SAPCD1
GoPubMedMSH5-SAPCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:28:14 CEST 2020

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