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MSH5-SAPCD1 (MSH5-SAPCD1 readthrough (NMD candidate))

Identity

Alias_namesMSH5-C6orf26
MSH5-C6orf26 readthrough (non-protein coding)
Other alias
HGNC (Hugo) MSH5-SAPCD1
LocusID (NCBI) 100532732
Atlas_Id 70517
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31739948 and ends at 31764847 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSH5-SAPCD1   41994
Cards
Entrez_Gene (NCBI)MSH5-SAPCD1  100532732  MSH5-SAPCD1 readthrough (NMD candidate)
AliasesMSH5-C6orf26
GeneCards (Weizmann)MSH5-SAPCD1
Ensembl hg19 (Hinxton)ENSG00000255152 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255152 [Gene_View]  ENSG00000255152 [Sequence]  chr6:31739948-31764847 [Contig_View]  MSH5-SAPCD1 [Vega]
ICGC DataPortalENSG00000255152
TCGA cBioPortalMSH5-SAPCD1
AceView (NCBI)MSH5-SAPCD1
Genatlas (Paris)MSH5-SAPCD1
WikiGenes100532732
SOURCE (Princeton)MSH5-SAPCD1
Genetics Home Reference (NIH)MSH5-SAPCD1
Genomic and cartography
GoldenPath hg38 (UCSC)MSH5-SAPCD1  -     chr6:31739948-31764847 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSH5-SAPCD1  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblMSH5-SAPCD1 - 6p21.33 [CytoView hg19]  MSH5-SAPCD1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIMSH5-SAPCD1 [Mapview hg19]  MSH5-SAPCD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ245661 AL122094
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)MSH5-SAPCD1
Cluster EST : UnigeneHs.647011 [ NCBI ]
CGAP (NCI)Hs.647011
Alternative Splicing GalleryENSG00000255152
Gene ExpressionMSH5-SAPCD1 [ NCBI-GEO ]   MSH5-SAPCD1 [ EBI - ARRAY_EXPRESS ]   MSH5-SAPCD1 [ SEEK ]   MSH5-SAPCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)MSH5-SAPCD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100532732
GTEX Portal (Tissue expression)MSH5-SAPCD1
Human Protein AtlasENSG00000255152-MSH5-SAPCD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MSH5-SAPCD1
DMDM Disease mutations100532732
Blocks (Seattle)MSH5-SAPCD1
Human Protein Atlas [tissue]ENSG00000255152-MSH5-SAPCD1 [tissue]
IPI###############################################################################################################################################################################################################################################################   
Protein Interaction databases
FunCoupENSG00000255152
BioGRIDMSH5-SAPCD1
STRING (EMBL)MSH5-SAPCD1
ZODIACMSH5-SAPCD1
Ontologies - Pathways
Huge Navigator MSH5-SAPCD1 [HugePedia]
snp3D : Map Gene to Disease100532732
BioCentury BCIQMSH5-SAPCD1
ClinGenMSH5-SAPCD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100532732
Clinical trialMSH5-SAPCD1
Miscellaneous
canSAR (ICR)MSH5-SAPCD1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSH5-SAPCD1
EVEXMSH5-SAPCD1
GoPubMedMSH5-SAPCD1
iHOPMSH5-SAPCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:18:47 CEST 2018

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