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MSL1 (MSL complex subunit 1)

Identity

Alias (NCBI)MSL-1
HGNC (Hugo) MSL1
HGNC Alias symbhMSL1
MSL-1
DKFZp686P24239
HGNC Previous namemale-specific lethal 1 homolog (Drosophila)
LocusID (NCBI) 339287
Atlas_Id 51219
Location 17q21.1  [Link to chromosome band 17q21]
Location_base_pair Starts at 40121971 and ends at 40130314 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ITGA10 (1q21.1) / MSL1 (17q21.1)LOC646626 (1p22.3) / MSL1 (17q21.1)MSL1 (17q21.1) / CDK12 (17q12)
MSL1 (17q21.1) / MSL1 (17q21.1)MSL1 (17q21.1) / PPP3CA (4q24)MSL1 (17q21.1) / RBM28 (7q32.1)
RARA (17q21.2) / MSL1 (17q21.1)WIPF2 (17q21.1) / MSL1 (17q21.1)RARA 17q21.2 / MSL1 17q21.1
WIPF2 17q21.1 / MSL1 17q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MSL1   27905
Cards
Entrez_Gene (NCBI)MSL1    MSL complex subunit 1
AliasesMSL-1
GeneCards (Weizmann)MSL1
Ensembl hg19 (Hinxton)ENSG00000188895 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188895 [Gene_View]  ENSG00000188895 [Sequence]  chr17:40121971-40130314 [Contig_View]  MSL1 [Vega]
ICGC DataPortalENSG00000188895
TCGA cBioPortalMSL1
AceView (NCBI)MSL1
Genatlas (Paris)MSL1
SOURCE (Princeton)MSL1
Genetics Home Reference (NIH)MSL1
Genomic and cartography
GoldenPath hg38 (UCSC)MSL1  -     chr17:40121971-40130314 +  17q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSL1  -     17q21.1   [Description]    (hg19-Feb_2009)
GoldenPathMSL1 - 17q21.1 [CytoView hg19]  MSL1 - 17q21.1 [CytoView hg38]
ImmunoBaseENSG00000188895
Genome Data Viewer NCBIMSL1 [Mapview hg19]  
OMIM614801   
Gene and transcription
Genbank (Entrez)AK055378 AK124185 AK125654 AK297619 AL049450
RefSeq transcript (Entrez)NM_001012241 NM_001365919 NM_001365920 NM_001365921
Consensus coding sequences : CCDS (NCBI)MSL1
Gene ExpressionMSL1 [ NCBI-GEO ]   MSL1 [ EBI - ARRAY_EXPRESS ]   MSL1 [ SEEK ]   MSL1 [ MEM ]
Gene Expression Viewer (FireBrowse)MSL1 [ Firebrowse - Broad ]
GenevisibleExpression of MSL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339287
GTEX Portal (Tissue expression)MSL1
Human Protein AtlasENSG00000188895-MSL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68DK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68DK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68DK7
PhosPhoSitePlusQ68DK7
Domains : Interpro (EBI)Msl-1    MSL1_dimer    PEHE_dom   
Domain families : Pfam (Sanger)MSL1_dimer (PF16801)    PEHE (PF15275)   
Domain families : Pfam (NCBI)pfam16801    pfam15275   
Domain families : Smart (EMBL)PEHE (SM01300)  
Conserved Domain (NCBI)MSL1
PDB (RSDB)4B7Y    4B86    4DNC   
PDB Europe4B7Y    4B86    4DNC   
PDB (PDBSum)4B7Y    4B86    4DNC   
PDB (IMB)4B7Y    4B86    4DNC   
Structural Biology KnowledgeBase4B7Y    4B86    4DNC   
SCOP (Structural Classification of Proteins)4B7Y    4B86    4DNC   
CATH (Classification of proteins structures)4B7Y    4B86    4DNC   
SuperfamilyQ68DK7
AlphaFold pdb e-kbQ68DK7   
Human Protein Atlas [tissue]ENSG00000188895-MSL1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q68DK7
IntAct (EBI)Q68DK7
BioGRIDMSL1
STRING (EMBL)MSL1
ZODIACMSL1
Ontologies - Pathways
QuickGOQ68DK7
Ontology : AmiGOchromatin binding  protein binding  nucleus  nucleoplasm  nucleoplasm  nuclear speck  histone H4-K16 acetylation  histone H4-K16 acetylation  MSL complex  MSL complex  
Ontology : EGO-EBIchromatin binding  protein binding  nucleus  nucleoplasm  nucleoplasm  nuclear speck  histone H4-K16 acetylation  histone H4-K16 acetylation  MSL complex  MSL complex  
NDEx NetworkMSL1
Atlas of Cancer Signalling NetworkMSL1
Wikipedia pathwaysMSL1
Orthology - Evolution
OrthoDB339287
GeneTree (enSembl)ENSG00000188895
Phylogenetic Trees/Animal Genes : TreeFamMSL1
Homologs : HomoloGeneMSL1
Homology/Alignments : Family Browser (UCSC)MSL1
Gene fusions - Rearrangements
Fusion : MitelmanRARA/MSL1 [17q21.2/17q21.1]  
Fusion : MitelmanWIPF2/MSL1 [17q21.1/17q21.1]  
Fusion : QuiverMSL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSL1
dbVarMSL1
ClinVarMSL1
MonarchMSL1
1000_GenomesMSL1 
Exome Variant ServerMSL1
GNOMAD BrowserENSG00000188895
Varsome BrowserMSL1
ACMGMSL1 variants
VarityQ68DK7
Genomic Variants (DGV)MSL1 [DGVbeta]
DECIPHERMSL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSL1 
Mutations
ICGC Data PortalMSL1 
TCGA Data PortalMSL1 
Broad Tumor PortalMSL1
OASIS PortalMSL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMSL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMSL1
Mutations and Diseases : HGMDMSL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMSL1
DgiDB (Drug Gene Interaction Database)MSL1
DoCM (Curated mutations)MSL1
CIViC (Clinical Interpretations of Variants in Cancer)MSL1
Cancer3DMSL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614801   
Orphanet
DisGeNETMSL1
MedgenMSL1
Genetic Testing Registry MSL1
NextProtQ68DK7 [Medical]
GENETestsMSL1
Target ValidationMSL1
Huge Navigator MSL1 [HugePedia]
ClinGenMSL1
Clinical trials, drugs, therapy
MyCancerGenomeMSL1
Protein Interactions : CTDMSL1
Pharm GKB GenePA164723127
PharosQ68DK7
Clinical trialMSL1
Miscellaneous
canSAR (ICR)MSL1
HarmonizomeMSL1
DataMed IndexMSL1
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMSL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:21:24 CEST 2021

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