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MSL3 (male-specific lethal 3 homolog (Drosophila))

Identity

Alias_namesMSL3L1
male-specific lethal-3 (Drosophila)-like 1
male-specific lethal 3-like 1 (Drosophila)
Other alias
HGNC (Hugo) MSL3
LocusID (NCBI) 10943
Atlas_Id 70519
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 11758582 and ends at 11775753 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MSL3 (Xp22.2) / ALB (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSL3   7370
Cards
Entrez_Gene (NCBI)MSL3  10943  male-specific lethal 3 homolog (Drosophila)
AliasesMSL3L1
GeneCards (Weizmann)MSL3
Ensembl hg19 (Hinxton)ENSG00000005302 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005302 [Gene_View]  chrX:11758582-11775753 [Contig_View]  MSL3 [Vega]
ICGC DataPortalENSG00000005302
TCGA cBioPortalMSL3
AceView (NCBI)MSL3
Genatlas (Paris)MSL3
WikiGenes10943
SOURCE (Princeton)MSL3
Genetics Home Reference (NIH)MSL3
Genomic and cartography
GoldenPath hg38 (UCSC)MSL3  -     chrX:11758582-11775753 +  Xp22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSL3  -     Xp22.2   [Description]    (hg19-Feb_2009)
EnsemblMSL3 - Xp22.2 [CytoView hg19]  MSL3 - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBIMSL3 [Mapview hg19]  MSL3 [Mapview hg38]
OMIM300609   
Gene and transcription
Genbank (Entrez)AF117065 AK000793 AK025642 AK289780 AK294255
RefSeq transcript (Entrez)NM_001193270 NM_001282174 NM_006800 NM_078628 NM_078629 NM_078630
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MSL3
Cluster EST : UnigeneHs.655288 [ NCBI ]
CGAP (NCI)Hs.655288
Alternative Splicing GalleryENSG00000005302
Gene ExpressionMSL3 [ NCBI-GEO ]   MSL3 [ EBI - ARRAY_EXPRESS ]   MSL3 [ SEEK ]   MSL3 [ MEM ]
Gene Expression Viewer (FireBrowse)MSL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10943
GTEX Portal (Tissue expression)MSL3
Human Protein AtlasENSG00000005302-MSL3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5Y2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5Y2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5Y2
Splice isoforms : SwissVarQ8N5Y2
PhosPhoSitePlusQ8N5Y2
Domaine pattern : Prosite (Expaxy)MRG (PS51640)   
Domains : Interpro (EBI)Chromo/chromo_shadow_dom    Chromodomain-like    MRG    MRG_dom    Tudor-knot   
Domain families : Pfam (Sanger)MRG (PF05712)    Tudor-knot (PF11717)   
Domain families : Pfam (NCBI)pfam05712    pfam11717   
Domain families : Smart (EMBL)CHROMO (SM00298)  
Conserved Domain (NCBI)MSL3
DMDM Disease mutations10943
Blocks (Seattle)MSL3
PDB (SRS)2Y0N    3OA6    3OB9   
PDB (PDBSum)2Y0N    3OA6    3OB9   
PDB (IMB)2Y0N    3OA6    3OB9   
PDB (RSDB)2Y0N    3OA6    3OB9   
Structural Biology KnowledgeBase2Y0N    3OA6    3OB9   
SCOP (Structural Classification of Proteins)2Y0N    3OA6    3OB9   
CATH (Classification of proteins structures)2Y0N    3OA6    3OB9   
SuperfamilyQ8N5Y2
Human Protein Atlas [tissue]ENSG00000005302-MSL3 [tissue]
Peptide AtlasQ8N5Y2
HPRD05344
IPIIPI00297145   IPI01016027   IPI00641297   IPI00375604   IPI00854805   IPI00377170   IPI00947171   IPI00944949   IPI00946860   IPI00945405   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5Y2
IntAct (EBI)Q8N5Y2
FunCoupENSG00000005302
BioGRIDMSL3
STRING (EMBL)MSL3
ZODIACMSL3
Ontologies - Pathways
QuickGOQ8N5Y2
Ontology : AmiGODNA binding  nucleoplasm  chromatin remodeling  chromatin silencing  transcription, DNA-templated  histone deacetylation  methylated histone binding  NuA4 histone acetyltransferase complex  histone H2A acetylation  histone H4-K16 acetylation  MSL complex  
Ontology : EGO-EBIDNA binding  nucleoplasm  chromatin remodeling  chromatin silencing  transcription, DNA-templated  histone deacetylation  methylated histone binding  NuA4 histone acetyltransferase complex  histone H2A acetylation  histone H4-K16 acetylation  MSL complex  
NDEx NetworkMSL3
Atlas of Cancer Signalling NetworkMSL3
Wikipedia pathwaysMSL3
Orthology - Evolution
OrthoDB10943
GeneTree (enSembl)ENSG00000005302
Phylogenetic Trees/Animal Genes : TreeFamMSL3
HOVERGENQ8N5Y2
HOGENOMQ8N5Y2
Homologs : HomoloGeneMSL3
Homology/Alignments : Family Browser (UCSC)MSL3
Gene fusions - Rearrangements
Tumor Fusion PortalMSL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSL3
dbVarMSL3
ClinVarMSL3
1000_GenomesMSL3 
Exome Variant ServerMSL3
ExAC (Exome Aggregation Consortium)ENSG00000005302
GNOMAD BrowserENSG00000005302
Genetic variants : HAPMAP10943
Genomic Variants (DGV)MSL3 [DGVbeta]
DECIPHERMSL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSL3 
Mutations
ICGC Data PortalMSL3 
TCGA Data PortalMSL3 
Broad Tumor PortalMSL3
OASIS PortalMSL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMSL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMSL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MSL3
DgiDB (Drug Gene Interaction Database)MSL3
DoCM (Curated mutations)MSL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MSL3 (select a term)
intoGenMSL3
Cancer3DMSL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300609   
Orphanet
DisGeNETMSL3
MedgenMSL3
Genetic Testing Registry MSL3
NextProtQ8N5Y2 [Medical]
TSGene10943
GENETestsMSL3
Target ValidationMSL3
Huge Navigator MSL3 [HugePedia]
snp3D : Map Gene to Disease10943
BioCentury BCIQMSL3
ClinGenMSL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10943
Chemical/Pharm GKB GenePA164723161
Clinical trialMSL3
Miscellaneous
canSAR (ICR)MSL3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSL3
EVEXMSL3
GoPubMedMSL3
iHOPMSL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:12 CET 2017

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