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MSL3P1 (male-specific lethal 3 homolog (Drosophila) pseudogene 1)

Identity

Alias_namesMSL3L2
male-specific lethal 3-like 2 (Drosophila)
Other alias
HGNC (Hugo) MSL3P1
LocusID (NCBI) 151507
Atlas_Id 78059
Location 2q37.1  [Link to chromosome band 2q37]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSL3P1   17837
Cards
Entrez_Gene (NCBI)MSL3P1  151507  male-specific lethal 3 homolog (Drosophila) pseudogene 1
AliasesMSL3L2
GeneCards (Weizmann)MSL3P1
Ensembl hg19 (Hinxton)ENSG00000224287 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224287 [Gene_View]  - [Contig_View]  MSL3P1 [Vega]
ICGC DataPortalENSG00000224287
TCGA cBioPortalMSL3P1
AceView (NCBI)MSL3P1
Genatlas (Paris)MSL3P1
WikiGenes151507
SOURCE (Princeton)MSL3P1
Genetics Home Reference (NIH)MSL3P1
Genomic and cartography
GoldenPath hg38 (UCSC)MSL3P1  -  
GoldenPath hg19 (UCSC)MSL3P1  -  
EnsemblMSL3P1 - [CytoView hg19]  MSL3P1 - [CytoView hg38]
Mapping of homologs : NCBIMSL3P1 [Mapview hg19]  MSL3P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA806373 AK301707 AK316372 AW371403 BI831020
RefSeq transcript (Entrez)NM_001166217
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MSL3P1
Cluster EST : UnigeneHs.355809 [ NCBI ]
CGAP (NCI)Hs.355809
Alternative Splicing GalleryENSG00000224287
Gene ExpressionMSL3P1 [ NCBI-GEO ]   MSL3P1 [ EBI - ARRAY_EXPRESS ]   MSL3P1 [ SEEK ]   MSL3P1 [ MEM ]
Gene Expression Viewer (FireBrowse)MSL3P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151507
GTEX Portal (Tissue expression)MSL3P1
Human Protein AtlasENSG00000224287-MSL3P1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C860   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C860  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C860
Splice isoforms : SwissVarP0C860
PhosPhoSitePlusP0C860
Domaine pattern : Prosite (Expaxy)MRG (PS51640)   
Domains : Interpro (EBI)MRG    MRG_dom   
Domain families : Pfam (Sanger)MRG (PF05712)   
Domain families : Pfam (NCBI)pfam05712   
Conserved Domain (NCBI)MSL3P1
DMDM Disease mutations151507
Blocks (Seattle)MSL3P1
SuperfamilyP0C860
Human Protein Atlas [tissue]ENSG00000224287-MSL3P1 [tissue]
Peptide AtlasP0C860
IPIIPI00902918   
Protein Interaction databases
DIP (DOE-UCLA)P0C860
IntAct (EBI)P0C860
FunCoupENSG00000224287
BioGRIDMSL3P1
STRING (EMBL)MSL3P1
ZODIACMSL3P1
Ontologies - Pathways
QuickGOP0C860
Ontology : AmiGOchromatin remodeling  chromatin silencing  transcription, DNA-templated  histone deacetylation  NuA4 histone acetyltransferase complex  histone H4 acetylation  histone H2A acetylation  
Ontology : EGO-EBIchromatin remodeling  chromatin silencing  transcription, DNA-templated  histone deacetylation  NuA4 histone acetyltransferase complex  histone H4 acetylation  histone H2A acetylation  
NDEx NetworkMSL3P1
Atlas of Cancer Signalling NetworkMSL3P1
Wikipedia pathwaysMSL3P1
Orthology - Evolution
OrthoDB151507
GeneTree (enSembl)ENSG00000224287
Phylogenetic Trees/Animal Genes : TreeFamMSL3P1
HOVERGENP0C860
HOGENOMP0C860
Homologs : HomoloGeneMSL3P1
Homology/Alignments : Family Browser (UCSC)MSL3P1
Gene fusions - Rearrangements
Tumor Fusion PortalMSL3P1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSL3P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSL3P1
dbVarMSL3P1
ClinVarMSL3P1
1000_GenomesMSL3P1 
Exome Variant ServerMSL3P1
ExAC (Exome Aggregation Consortium)ENSG00000224287
GNOMAD BrowserENSG00000224287
Genetic variants : HAPMAP151507
Genomic Variants (DGV)MSL3P1 [DGVbeta]
DECIPHERMSL3P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSL3P1 
Mutations
ICGC Data PortalMSL3P1 
TCGA Data PortalMSL3P1 
Broad Tumor PortalMSL3P1
OASIS PortalMSL3P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMSL3P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MSL3P1
DgiDB (Drug Gene Interaction Database)MSL3P1
DoCM (Curated mutations)MSL3P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MSL3P1 (select a term)
intoGenMSL3P1
Cancer3DMSL3P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMSL3P1
MedgenMSL3P1
Genetic Testing Registry MSL3P1
NextProtP0C860 [Medical]
TSGene151507
GENETestsMSL3P1
Target ValidationMSL3P1
Huge Navigator MSL3P1 [HugePedia]
snp3D : Map Gene to Disease151507
BioCentury BCIQMSL3P1
ClinGenMSL3P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151507
Chemical/Pharm GKB GenePA31175
Clinical trialMSL3P1
Miscellaneous
canSAR (ICR)MSL3P1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSL3P1
EVEXMSL3P1
GoPubMedMSL3P1
iHOPMSL3P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:05:49 CET 2017

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