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MSMO1 (methylsterol monooxygenase 1)

Identity

Alias_namesSC4MOL
sterol-C4-methyl oxidase-like
Alias_symbol (synonym)DESP4
ERG25
Other aliasMCCPD
HGNC (Hugo) MSMO1
LocusID (NCBI) 6307
Atlas_Id 70520
Location 4q32.3  [Link to chromosome band 4q32]
Location_base_pair Starts at 165327666 and ends at 165343162 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RAD23B (9q31.2) / MSMO1 (4q32.3)ZSWIM4 (19p13.13) / MSMO1 (4q32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSMO1   10545
Cards
Entrez_Gene (NCBI)MSMO1  6307  methylsterol monooxygenase 1
AliasesDESP4; ERG25; MCCPD; SC4MOL
GeneCards (Weizmann)MSMO1
Ensembl hg19 (Hinxton)ENSG00000052802 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000052802 [Gene_View]  chr4:165327666-165343162 [Contig_View]  MSMO1 [Vega]
ICGC DataPortalENSG00000052802
TCGA cBioPortalMSMO1
AceView (NCBI)MSMO1
Genatlas (Paris)MSMO1
WikiGenes6307
SOURCE (Princeton)MSMO1
Genetics Home Reference (NIH)MSMO1
Genomic and cartography
GoldenPath hg38 (UCSC)MSMO1  -     chr4:165327666-165343162 +  4q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSMO1  -     4q32.3   [Description]    (hg19-Feb_2009)
EnsemblMSMO1 - 4q32.3 [CytoView hg19]  MSMO1 - 4q32.3 [CytoView hg38]
Mapping of homologs : NCBIMSMO1 [Mapview hg19]  MSMO1 [Mapview hg38]
OMIM607545   616834   
Gene and transcription
Genbank (Entrez)AK292418 AK295432 AK309206 AV704962 BC010653
RefSeq transcript (Entrez)NM_001017369 NM_006745
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MSMO1
Cluster EST : UnigeneHs.105269 [ NCBI ]
CGAP (NCI)Hs.105269
Alternative Splicing GalleryENSG00000052802
Gene ExpressionMSMO1 [ NCBI-GEO ]   MSMO1 [ EBI - ARRAY_EXPRESS ]   MSMO1 [ SEEK ]   MSMO1 [ MEM ]
Gene Expression Viewer (FireBrowse)MSMO1 K Firmb2owse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6307
GTEX Portal (Tissue expression)MSMO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15800   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15800  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15800
Splice isoforms : SwissVarQ15800
PhosPhoSitePlusQ15800
Domains : Interpro (EBI)Fatty_acid_hydroxylase   
Domain families : Pfam (Sanger)FA_hydroxylase (PF04116)   
Domain families : Pfam (NCBI)pfam04116   
Conserved Domain (NCBI)MSMO1
DMDM Disease mutations6307
Blocks (Seattle)MSMO1
SuperfamilyQ15800
Human Protein AtlasENSG00000052802
Peptide AtlasQ15800
HPRD07396
IPIIPI00019899   IPI00556210   IPI00964631   IPI00967748   IPI00964616   
Protein Interaction databases
DIP (DOE-UCLA)Q15800
IntAct (EBI)Q15800
FunCoupENSG00000052802
BioGRIDMSMO1
STRING (EMBL)MSMO1
ZODIACMSMO1
Ontologies - Pathways
QuickGOQ15800
Ontology : AmiGOC-4 methylsterol oxidase activity  C-4 methylsterol oxidase activity  iron ion binding  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  plasma membrane  fatty acid metabolic process  cholesterol biosynthetic process  steroid metabolic process  integral component of membrane  sterol biosynthetic process  oxidation-reduction process  
Ontology : EGO-EBIC-4 methylsterol oxidase activity  C-4 methylsterol oxidase activity  iron ion binding  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  plasma membrane  fatty acid metabolic process  cholesterol biosynthetic process  steroid metabolic process  integral component of membrane  sterol biosynthetic process  oxidation-reduction process  
Pathways : KEGGSteroid biosynthesis   
NDEx NetworkMSMO1
Atlas of Cancer Signalling NetworkMSMO1
Wikipedia pathwaysMSMO1
Orthology - Evolution
OrthoDB6307
GeneTree (enSembl)ENSG00000052802
Phylogenetic Trees/Animal Genes : TreeFamMSMO1
HOVERGENQ15800
HOGENOMQ15800
Homologs : HomoloGeneMSMO1
Homology/Alignments : Family Browser (UCSC)MSMO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSMO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSMO1
dbVarMSMO1
ClinVarMSMO1
1000_GenomesMSMO1 
Exome Variant ServerMSMO1
ExAC (Exome Aggregation Consortium)MSMO1 (select the gene name)
Genetic variants : HAPMAP6307
Genomic Variants (DGV)MSMO1 [DGVbeta]
DECIPHERMSMO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSMO1 
Mutations
ICGC Data PortalMSMO1 
TCGA Data PortalMSMO1 
Broad Tumor PortalMSMO1
OASIS PortalMSMO1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMSMO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MSMO1
DgiDB (Drug Gene Interaction Database)MSMO1
DoCM (Curated mutations)MSMO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MSMO1 (select a term)
intoGenMSMO1
Cancer3DMSMO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607545    616834   
Orphanet
MedgenMSMO1
Genetic Testing Registry MSMO1
NextProtQ15800 [Medical]
TSGene6307
GENETestsMSMO1
Target ValidationMSMO1
Huge Navigator MSMO1 [HugePedia]
snp3D : Map Gene to Disease6307
BioCentury BCIQMSMO1
ClinGenMSMO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6307
Chemical/Pharm GKB GenePA34955
Clinical trialMSMO1
Miscellaneous
canSAR (ICR)MSMO1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSMO1
EVEXMSMO1
GoPubMedMSMO1
iHOPMSMO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:22 CEST 2017

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