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MSMP (microseminoprotein, prostate associated)

Identity

Alias_symbol (synonym)PC-3
PSMP
Other alias
HGNC (Hugo) MSMP
LocusID (NCBI) 692094
Atlas_Id 53874
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35752991 and ends at 35754277 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MSMP (9p13.3) / RGP1 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSMP   29663
Cards
Entrez_Gene (NCBI)MSMP  692094  microseminoprotein, prostate associated
AliasesPSMP
GeneCards (Weizmann)MSMP
Ensembl hg19 (Hinxton)ENSG00000215183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215183 [Gene_View]  chr9:35752991-35754277 [Contig_View]  MSMP [Vega]
ICGC DataPortalENSG00000215183
TCGA cBioPortalMSMP
AceView (NCBI)MSMP
Genatlas (Paris)MSMP
WikiGenes692094
SOURCE (Princeton)MSMP
Genetics Home Reference (NIH)MSMP
Genomic and cartography
GoldenPath hg38 (UCSC)MSMP  -     chr9:35752991-35754277 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSMP  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblMSMP - 9p13.3 [CytoView hg19]  MSMP - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIMSMP [Mapview hg19]  MSMP [Mapview hg38]
OMIM612191   
Gene and transcription
Genbank (Entrez)BC071800 BC105274 BE439525 DQ012170
RefSeq transcript (Entrez)NM_001044264
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MSMP
Cluster EST : UnigeneHs.571601 [ NCBI ]
CGAP (NCI)Hs.571601
Alternative Splicing GalleryENSG00000215183
Gene ExpressionMSMP [ NCBI-GEO ]   MSMP [ EBI - ARRAY_EXPRESS ]   MSMP [ SEEK ]   MSMP [ MEM ]
Gene Expression Viewer (FireBrowse)MSMP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)692094
GTEX Portal (Tissue expression)MSMP
Human Protein AtlasENSG00000215183-MSMP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1L6U9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1L6U9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1L6U9
Splice isoforms : SwissVarQ1L6U9
PhosPhoSitePlusQ1L6U9
Domains : Interpro (EBI)PSP94   
Domain families : Pfam (Sanger)PSP94 (PF05825)   
Domain families : Pfam (NCBI)pfam05825   
Conserved Domain (NCBI)MSMP
DMDM Disease mutations692094
Blocks (Seattle)MSMP
SuperfamilyQ1L6U9
Human Protein Atlas [tissue]ENSG00000215183-MSMP [tissue]
Peptide AtlasQ1L6U9
IPIIPI00759658   
Protein Interaction databases
DIP (DOE-UCLA)Q1L6U9
IntAct (EBI)Q1L6U9
FunCoupENSG00000215183
BioGRIDMSMP
STRING (EMBL)MSMP
ZODIACMSMP
Ontologies - Pathways
QuickGOQ1L6U9
Ontology : AmiGOmolecular_function  extracellular space  cytoplasm  biological_process  
Ontology : EGO-EBImolecular_function  extracellular space  cytoplasm  biological_process  
NDEx NetworkMSMP
Atlas of Cancer Signalling NetworkMSMP
Wikipedia pathwaysMSMP
Orthology - Evolution
OrthoDB692094
GeneTree (enSembl)ENSG00000215183
Phylogenetic Trees/Animal Genes : TreeFamMSMP
HOVERGENQ1L6U9
HOGENOMQ1L6U9
Homologs : HomoloGeneMSMP
Homology/Alignments : Family Browser (UCSC)MSMP
Gene fusions - Rearrangements
Tumor Fusion PortalMSMP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSMP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSMP
dbVarMSMP
ClinVarMSMP
1000_GenomesMSMP 
Exome Variant ServerMSMP
ExAC (Exome Aggregation Consortium)ENSG00000215183
GNOMAD BrowserENSG00000215183
Genetic variants : HAPMAP692094
Genomic Variants (DGV)MSMP [DGVbeta]
DECIPHERMSMP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSMP 
Mutations
ICGC Data PortalMSMP 
TCGA Data PortalMSMP 
Broad Tumor PortalMSMP
OASIS PortalMSMP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMSMP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMSMP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MSMP
DgiDB (Drug Gene Interaction Database)MSMP
DoCM (Curated mutations)MSMP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MSMP (select a term)
intoGenMSMP
Cancer3DMSMP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612191   
Orphanet
DisGeNETMSMP
MedgenMSMP
Genetic Testing Registry MSMP
NextProtQ1L6U9 [Medical]
TSGene692094
GENETestsMSMP
Target ValidationMSMP
Huge Navigator MSMP [HugePedia]
snp3D : Map Gene to Disease692094
BioCentury BCIQMSMP
ClinGenMSMP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD692094
Chemical/Pharm GKB GenePA164723190
Clinical trialMSMP
Miscellaneous
canSAR (ICR)MSMP (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSMP
EVEXMSMP
GoPubMedMSMP
iHOPMSMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:24:53 CET 2017

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