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MSRA (methionine sulfoxide reductase A)

Identity

Other aliasPMSR
HGNC (Hugo) MSRA
LocusID (NCBI) 4482
Atlas_Id 41436
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 10054269 and ends at 10428891 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CRTAP (3p22.3) / MSRA (8p23.1)MSRA (8p23.1) / CSGALNACT1 (8p21.3)MSRA (8p23.1) / DEFB135 (8p23.1)
MSRA (8p23.1) / S100A9 (1q21.3)MSRA (8p23.1) / SOAT1 (1q25.2)MYO1D (17q11.2) / MSRA (8p23.1)
MSRA 8p23.1 / CSGALNACT1 8p21.3MSRA 8p23.1 / DEFB135 8p23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSRA   7377
Cards
Entrez_Gene (NCBI)MSRA  4482  methionine sulfoxide reductase A
AliasesPMSR
GeneCards (Weizmann)MSRA
Ensembl hg19 (Hinxton)ENSG00000175806 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175806 [Gene_View]  chr8:10054269-10428891 [Contig_View]  MSRA [Vega]
ICGC DataPortalENSG00000175806
TCGA cBioPortalMSRA
AceView (NCBI)MSRA
Genatlas (Paris)MSRA
WikiGenes4482
SOURCE (Princeton)MSRA
Genetics Home Reference (NIH)MSRA
Genomic and cartography
GoldenPath hg38 (UCSC)MSRA  -     chr8:10054269-10428891 +  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSRA  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblMSRA - 8p23.1 [CytoView hg19]  MSRA - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIMSRA [Mapview hg19]  MSRA [Mapview hg38]
OMIM601250   
Gene and transcription
Genbank (Entrez)AF086925 AF183420 AI261219 AJ242973 AK123132
RefSeq transcript (Entrez)NM_001135670 NM_001135671 NM_001199729 NM_012331
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MSRA
Cluster EST : UnigeneHs.490981 [ NCBI ]
CGAP (NCI)Hs.490981
Alternative Splicing GalleryENSG00000175806
Gene ExpressionMSRA [ NCBI-GEO ]   MSRA [ EBI - ARRAY_EXPRESS ]   MSRA [ SEEK ]   MSRA [ MEM ]
Gene Expression Viewer (FireBrowse)MSRA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4482
GTEX Portal (Tissue expression)MSRA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJ68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJ68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJ68
Splice isoforms : SwissVarQ9UJ68
Catalytic activity : Enzyme1.8.4.11 [ Enzyme-Expasy ]   1.8.4.111.8.4.11 [ IntEnz-EBI ]   1.8.4.11 [ BRENDA ]   1.8.4.11 [ KEGG ]   
PhosPhoSitePlusQ9UJ68
Domains : Interpro (EBI)Met_Sox_Rdtase_MsrA   
Domain families : Pfam (Sanger)PMSR (PF01625)   
Domain families : Pfam (NCBI)pfam01625   
Conserved Domain (NCBI)MSRA
DMDM Disease mutations4482
Blocks (Seattle)MSRA
SuperfamilyQ9UJ68
Human Protein AtlasENSG00000175806
Peptide AtlasQ9UJ68
HPRD03152
IPIIPI00006592   IPI01016029   IPI00796388   IPI00794951   IPI00980576   IPI00974400   IPI00979875   IPI00795498   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJ68
IntAct (EBI)Q9UJ68
FunCoupENSG00000175806
BioGRIDMSRA
STRING (EMBL)MSRA
ZODIACMSRA
Ontologies - Pathways
QuickGOQ9UJ68
Ontology : AmiGOnucleoplasm  mitochondrion  cytosol  cytosol  cellular protein modification process  methionine metabolic process  response to oxidative stress  peptide-methionine (S)-S-oxide reductase activity  actin cytoskeleton  membrane  protein repair  oxidation-reduction process  extracellular exosome  
Ontology : EGO-EBInucleoplasm  mitochondrion  cytosol  cytosol  cellular protein modification process  methionine metabolic process  response to oxidative stress  peptide-methionine (S)-S-oxide reductase activity  actin cytoskeleton  membrane  protein repair  oxidation-reduction process  extracellular exosome  
NDEx NetworkMSRA
Atlas of Cancer Signalling NetworkMSRA
Wikipedia pathwaysMSRA
Orthology - Evolution
OrthoDB4482
GeneTree (enSembl)ENSG00000175806
Phylogenetic Trees/Animal Genes : TreeFamMSRA
HOVERGENQ9UJ68
HOGENOMQ9UJ68
Homologs : HomoloGeneMSRA
Homology/Alignments : Family Browser (UCSC)MSRA
Gene fusions - Rearrangements
Fusion : MitelmanMSRA/CSGALNACT1 [8p23.1/8p21.3]  
Fusion : MitelmanMSRA/DEFB135 [8p23.1/8p23.1]  [t(8;8)(p23;p23)]  
Fusion: TCGAMSRA 8p23.1 CSGALNACT1 8p21.3 SKCM
Fusion: TCGAMSRA 8p23.1 DEFB135 8p23.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSRA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSRA
dbVarMSRA
ClinVarMSRA
1000_GenomesMSRA 
Exome Variant ServerMSRA
ExAC (Exome Aggregation Consortium)MSRA (select the gene name)
Genetic variants : HAPMAP4482
Genomic Variants (DGV)MSRA [DGVbeta]
DECIPHERMSRA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSRA 
Mutations
ICGC Data PortalMSRA 
TCGA Data PortalMSRA 
Broad Tumor PortalMSRA
OASIS PortalMSRA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMSRA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMSRA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MSRA
DgiDB (Drug Gene Interaction Database)MSRA
DoCM (Curated mutations)MSRA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MSRA (select a term)
intoGenMSRA
Cancer3DMSRA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601250   
Orphanet
MedgenMSRA
Genetic Testing Registry MSRA
NextProtQ9UJ68 [Medical]
TSGene4482
GENETestsMSRA
Target ValidationMSRA
Huge Navigator MSRA [HugePedia]
snp3D : Map Gene to Disease4482
BioCentury BCIQMSRA
ClinGenMSRA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4482
Chemical/Pharm GKB GenePA31182
Clinical trialMSRA
Miscellaneous
canSAR (ICR)MSRA (select the gene name)
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSRA
EVEXMSRA
GoPubMedMSRA
iHOPMSRA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:00:45 CEST 2017

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