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MSRB3 (methionine sulfoxide reductase B3)

Identity

Other namesDFNB74
HGNC (Hugo) MSRB3
LocusID (NCBI) 253827
Location 12q14.3
Location_base_pair Starts at 65672423 and ends at 65860687 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MSRB3   27375
Cards
Entrez_Gene (NCBI)MSRB3  253827  methionine sulfoxide reductase B3
GeneCards (Weizmann)MSRB3
Ensembl (Hinxton)ENSG00000174099 [Gene_View]  chr12:65672423-65860687 [Contig_View]  MSRB3 [Vega]
ICGC DataPortalENSG00000174099
cBioPortalMSRB3
AceView (NCBI)MSRB3
Genatlas (Paris)MSRB3
WikiGenes253827
SOURCE (Princeton)NM_001031679 NM_001193460 NM_001193461 NM_198080
Genomic and cartography
GoldenPath (UCSC)MSRB3  -  12q14.3   chr12:65672423-65860687 +  12q14.3   [Description]    (hg19-Feb_2009)
EnsemblMSRB3 - 12q14.3 [CytoView]
Mapping of homologs : NCBIMSRB3 [Mapview]
OMIM613718   613719   
Gene and transcription
Genbank (Entrez)AK094185 AK122602 AK293084 AK299065 AK316365
RefSeq transcript (Entrez)NM_001031679 NM_001193460 NM_001193461 NM_198080
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NG_023441 NT_029419 NW_001838060 NW_004929384
Consensus coding sequences : CCDS (NCBI)MSRB3
Cluster EST : UnigeneHs.339024 [ NCBI ]
CGAP (NCI)Hs.339024
Alternative Splicing : Fast-db (Paris)GSHG0006804
Alternative Splicing GalleryENSG00000174099
Gene ExpressionMSRB3 [ NCBI-GEO ]     MSRB3 [ SEEK ]   MSRB3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXL7 (Uniprot)
NextProtQ8IXL7  [Medical]
With graphics : InterProQ8IXL7
Splice isoforms : SwissVarQ8IXL7 (Swissvar)
Catalytic activity : Enzyme1.8.4.- [ Enzyme-Expasy ]   1.8.4.-1.8.4.- [ IntEnz-EBI ]   1.8.4.- [ BRENDA ]   1.8.4.- [ KEGG ]   
Domains : Interpro (EBI)Met_Sox_Rdtase [organisation]   Met_Sox_Rdtase_MsrB [organisation]   Mss4-like [organisation]  
Related proteins : CluSTrQ8IXL7
Domain families : Pfam (Sanger)SelR (PF01641)   
Domain families : Pfam (NCBI)pfam01641   
DMDM Disease mutations253827
Blocks (Seattle)Q8IXL7
Human Protein AtlasENSG00000174099 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8IXL7
HPRD14785
IPIIPI00217550   IPI00479793   IPI01013461   IPI01013007   IPI01012074   IPI01011131   IPI01012459   IPI00941512   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXL7
IntAct (EBI)Q8IXL7
FunCoupENSG00000174099
BioGRIDMSRB3
InParanoidQ8IXL7
Interologous Interaction database Q8IXL7
IntegromeDBMSRB3
STRING (EMBL)MSRB3
Ontologies - Pathways
Ontology : AmiGOmitochondrion  endoplasmic reticulum  response to oxidative stress  zinc ion binding  protein repair  peptide-methionine (R)-S-oxide reductase activity  oxidation-reduction process  
Ontology : EGO-EBImitochondrion  endoplasmic reticulum  response to oxidative stress  zinc ion binding  protein repair  peptide-methionine (R)-S-oxide reductase activity  oxidation-reduction process  
Protein Interaction DatabaseMSRB3
Wikipedia pathwaysMSRB3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MSRB3
snp3D : Map Gene to Disease253827
SNP (GeneSNP Utah)MSRB3
SNP : HGBaseMSRB3
Genetic variants : HAPMAPMSRB3
Exome VariantMSRB3
1000_GenomesMSRB3 
ICGC programENSG00000174099 
Somatic Mutations in Cancer : COSMICMSRB3 
CONAN: Copy Number AnalysisMSRB3 
Mutations and Diseases : HGMDMSRB3
Mutations and Diseases : intOGenMSRB3
Genomic VariantsMSRB3  MSRB3 [DGVbeta]
dbVarMSRB3
ClinVarMSRB3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM613718    613719   
MedgenMSRB3
GENETestsMSRB3
Disease Genetic AssociationMSRB3
Huge Navigator MSRB3 [HugePedia]  MSRB3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneMSRB3
Homology/Alignments : Family Browser (UCSC)MSRB3
Phylogenetic Trees/Animal Genes : TreeFamMSRB3
Chemical/Protein Interactions : CTD253827
Chemical/Pharm GKB GenePA134991350
Clinical trialMSRB3
Cancer Resource (Charite)ENSG00000174099
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
CoreMineMSRB3
iHOPMSRB3
OncoSearchMSRB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:56:38 CEST 2014

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