Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MSRB3 (methionine sulfoxide reductase B3)

Identity

Other namesDFNB74
HGNC (Hugo) MSRB3
LocusID (NCBI) 253827
Location 12q14.3
Location_base_pair Starts at 65672423 and ends at 65860687 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MSRB3   27375
Entrez_Gene (NCBI)MSRB3  253827  methionine sulfoxide reductase B3
Cards
GeneCards (Weizmann)MSRB3
Ensembl (Hinxton)ENSG00000174099 [Gene_View]  chr12:65672423-65860687 [Contig_View]  MSRB3 [Vega]
AceView (NCBI)MSRB3
Genatlas (Paris)MSRB3
SOURCE (Stanford)NM_001031679 NM_001193460 NM_001193461 NM_198080
Genomic and cartography
GoldenPath (UCSC)MSRB3  -  12q14.3   chr12:65672423-65860687 +  12q14.3   [Description]    (hg19-Feb_2009)
EnsemblMSRB3 - 12q14.3 [CytoView]
Mapping of homologs : NCBIMSRB3 [Mapview]
OMIM613718   613719   
Gene and transcription
Genbank (Entrez)AK094185 AK122602 AK293084 AK299065 AK316365
RefSeq transcript (SRS)NM_001031679 NM_001193460 NM_001193461 NM_198080
RefSeq transcript (Entrez)NM_001031679 NM_001193460 NM_001193461 NM_198080
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NG_023441 NT_029419 NW_001838060 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NG_023441 NT_029419 NW_001838060 NW_004078075
Consensus coding sequences : CCDS (NCBI)MSRB3
Cluster EST : UnigeneHs.339024 [ SRS ] Hs.339024 [ NCBI ]
CGAP (NCI)Hs.339024
Alternative Splicing : Fast-db (Paris)GSHG0006804
Alternative Splicing GalleryENSG00000174099
Gene ExpressionMSRB3 [ NCBI-GEO ]   MSRB3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXL7 (SRS) Q8IXL7 (Uniprot)
NextProtQ8IXL7
With graphics : InterProQ8IXL7
Splice isoforms : SwissVarQ8IXL7(Swissvar)
Domains : Interpro (SRS)Met_Sox_Rdtase_MsrB    Mss4-like   
Domains : Interpro (EBI)Met_Sox_Rdtase_MsrB    Mss4-like   
Related proteins : CluSTrQ8IXL7
Domain families : Pfam (SRS)SelR (PF01641)   
Domain families : Pfam (Sanger)SelR (PF01641)   
Domain families : Pfam (NCBI)pfam01641   
DMDM253827
Blocks (Seattle)Q8IXL7
Human Protein AtlasENSG00000174099
HPRD14785
IPIIPI00217550   IPI00479793   IPI01013461   IPI01013007   IPI01012074   IPI01011131   IPI01012459   IPI00941512   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXL7
IntAct (EBI)Q8IXL7
FunCoupENSG00000174099
REACTOMEMSRB3
Protein Interaction Database253827
BioGRIDMSRB3
InParanoidQ8IXL7
Interologous Interaction database Q8IXL7
IntegromeDBMSRB3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MSRB3
SNP (GeneSNP Utah)MSRB3
SNP : HGBaseMSRB3
Genetic variants : HAPMAPMSRB3
Somatic Mutations in Cancer : COSMICMSRB3 
CONAN: Copy Number AnalysisMSRB3 
Mutations and Diseases : HGMDMSRB3
OMIM613718    613719   
GENETests613718    613719   
Disease Genetic AssociationMSRB3
Huge Navigator MSRB3 [HugePedia]  MSRB3 [HugeCancerGEM]
Genomic VariantsMSRB3  MSRB3 [DGVbeta]
snp3D : Map Gene to Disease253827
General knowledge
Homologs : HomoloGeneMSRB3
Homology/Alignments : Family Browser (UCSC)MSRB3
Phylogenetic Trees/Animal Genes : TreeFamMSRB3
Catalytic activity : Enzyme1.8.4.- [ Enzyme-Expasy ]   1.8.4.- [ Enzyme-SRS ]   1.8.4.- [ IntEnz-EBI ]   1.8.4.- [ BRENDA ]   1.8.4.- [ KEGG ]   
Chemical/Protein Interactions : CTD253827
Chemical/Pharm GKB GenePA134991350
Clinical trialMSRB3
Cancer Resource (Charite)ENSG00000174099
Ontology : AmiGOmitochondrion  endoplasmic reticulum  zinc ion binding  protein repair  peptide-methionine (R)-S-oxide reductase activity  metal ion binding  
Ontology : EGO-EBImitochondrion  endoplasmic reticulum  zinc ion binding  protein repair  peptide-methionine (R)-S-oxide reductase activity  metal ion binding  
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
PubGeneMSRB3
iHOPMSRB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:45:25 CEST 2013
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