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MSS51 (MSS51 mitochondrial translational activator)

Identity

Alias (NCBI)ZMYND17
HGNC (Hugo) MSS51
HGNC Alias symbFLJ39565
HGNC Previous nameZMYND17
HGNC Previous namezinc finger, MYND-type containing 17
 MSS51 mitochondrial translational activator homolog (S. cerevisiae)
LocusID (NCBI) 118490
Atlas_Id 70521
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73423579 and ends at 73433561 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MSS51 (10q22.2) / LAS1L (Xq12)RAF1 (3p25.2) / MSS51 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MSS51   21000
Cards
Entrez_Gene (NCBI)MSS51    MSS51 mitochondrial translational activator
AliasesZMYND17
GeneCards (Weizmann)MSS51
Ensembl hg19 (Hinxton)ENSG00000166343 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166343 [Gene_View]  ENSG00000166343 [Sequence]  chr10:73423579-73433561 [Contig_View]  MSS51 [Vega]
ICGC DataPortalENSG00000166343
TCGA cBioPortalMSS51
AceView (NCBI)MSS51
Genatlas (Paris)MSS51
SOURCE (Princeton)MSS51
Genetics Home Reference (NIH)MSS51
Genomic and cartography
GoldenPath hg38 (UCSC)MSS51  -     chr10:73423579-73433561 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSS51  -     10q22.2   [Description]    (hg19-Feb_2009)
GoldenPathMSS51 - 10q22.2 [CytoView hg19]  MSS51 - 10q22.2 [CytoView hg38]
ImmunoBaseENSG00000166343
Genome Data Viewer NCBIMSS51 [Mapview hg19]  
OMIM614773   
Gene and transcription
Genbank (Entrez)AK096884 AK309870 BC094693 BC109255 BC109256
RefSeq transcript (Entrez)NM_001024593
Consensus coding sequences : CCDS (NCBI)MSS51
Gene ExpressionMSS51 [ NCBI-GEO ]   MSS51 [ EBI - ARRAY_EXPRESS ]   MSS51 [ SEEK ]   MSS51 [ MEM ]
Gene Expression Viewer (FireBrowse)MSS51 [ Firebrowse - Broad ]
GenevisibleExpression of MSS51 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118490
GTEX Portal (Tissue expression)MSS51
Human Protein AtlasENSG00000166343-MSS51 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4VC12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4VC12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4VC12
PhosPhoSitePlusQ4VC12
Domaine pattern : Prosite (Expaxy)ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)Znf_MYND   
Domain families : Pfam (Sanger)zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam01753   
Conserved Domain (NCBI)MSS51
SuperfamilyQ4VC12
AlphaFold pdb e-kbQ4VC12   
Human Protein Atlas [tissue]ENSG00000166343-MSS51 [tissue]
HPRD15742
Protein Interaction databases
DIP (DOE-UCLA)Q4VC12
IntAct (EBI)Q4VC12
BioGRIDMSS51
STRING (EMBL)MSS51
ZODIACMSS51
Ontologies - Pathways
QuickGOQ4VC12
Ontology : AmiGOprotein binding  metal ion binding  
Ontology : EGO-EBIprotein binding  metal ion binding  
NDEx NetworkMSS51
Atlas of Cancer Signalling NetworkMSS51
Wikipedia pathwaysMSS51
Orthology - Evolution
OrthoDB118490
GeneTree (enSembl)ENSG00000166343
Phylogenetic Trees/Animal Genes : TreeFamMSS51
Homologs : HomoloGeneMSS51
Homology/Alignments : Family Browser (UCSC)MSS51
Gene fusions - Rearrangements
Fusion : QuiverMSS51
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSS51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSS51
dbVarMSS51
ClinVarMSS51
MonarchMSS51
1000_GenomesMSS51 
Exome Variant ServerMSS51
GNOMAD BrowserENSG00000166343
Varsome BrowserMSS51
ACMGMSS51 variants
VarityQ4VC12
Genomic Variants (DGV)MSS51 [DGVbeta]
DECIPHERMSS51 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSS51 
Mutations
ICGC Data PortalMSS51 
TCGA Data PortalMSS51 
Broad Tumor PortalMSS51
OASIS PortalMSS51 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMSS51  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMSS51
Mutations and Diseases : HGMDMSS51
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMSS51
DgiDB (Drug Gene Interaction Database)MSS51
DoCM (Curated mutations)MSS51
CIViC (Clinical Interpretations of Variants in Cancer)MSS51
Cancer3DMSS51
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614773   
Orphanet
DisGeNETMSS51
MedgenMSS51
Genetic Testing Registry MSS51
NextProtQ4VC12 [Medical]
GENETestsMSS51
Target ValidationMSS51
Huge Navigator MSS51 [HugePedia]
ClinGenMSS51
Clinical trials, drugs, therapy
MyCancerGenomeMSS51
Protein Interactions : CTDMSS51
Pharm GKB GenePA134886837
PharosQ4VC12
Clinical trialMSS51
Miscellaneous
canSAR (ICR)MSS51
HarmonizomeMSS51
DataMed IndexMSS51
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMSS51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:11:54 CEST 2021

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