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MSS51 (MSS51 mitochondrial translational activator)

Identity

Alias_namesZMYND17
zinc finger, MYND-type containing 17
MSS51 mitochondrial translational activator homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ39565
Other alias
HGNC (Hugo) MSS51
LocusID (NCBI) 118490
Atlas_Id 70521
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 73423579 and ends at 73433561 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MSS51 (10q22.2) / LAS1L (Xq12)RAF1 (3p25.2) / MSS51 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MSS51   21000
Cards
Entrez_Gene (NCBI)MSS51  118490  MSS51 mitochondrial translational activator
AliasesZMYND17
GeneCards (Weizmann)MSS51
Ensembl hg19 (Hinxton)ENSG00000166343 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166343 [Gene_View]  chr10:73423579-73433561 [Contig_View]  MSS51 [Vega]
ICGC DataPortalENSG00000166343
TCGA cBioPortalMSS51
AceView (NCBI)MSS51
Genatlas (Paris)MSS51
WikiGenes118490
SOURCE (Princeton)MSS51
Genetics Home Reference (NIH)MSS51
Genomic and cartography
GoldenPath hg38 (UCSC)MSS51  -     chr10:73423579-73433561 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MSS51  -     10q22.2   [Description]    (hg19-Feb_2009)
EnsemblMSS51 - 10q22.2 [CytoView hg19]  MSS51 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIMSS51 [Mapview hg19]  MSS51 [Mapview hg38]
OMIM614773   
Gene and transcription
Genbank (Entrez)AK096884 AK309870 BC094693 BC109255 BC109256
RefSeq transcript (Entrez)NM_001024593
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MSS51
Cluster EST : UnigeneHs.631823 [ NCBI ]
CGAP (NCI)Hs.631823
Alternative Splicing GalleryENSG00000166343
Gene ExpressionMSS51 [ NCBI-GEO ]   MSS51 [ EBI - ARRAY_EXPRESS ]   MSS51 [ SEEK ]   MSS51 [ MEM ]
Gene Expression Viewer (FireBrowse)MSS51 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118490
GTEX Portal (Tissue expression)MSS51
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4VC12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4VC12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4VC12
Splice isoforms : SwissVarQ4VC12
PhosPhoSitePlusQ4VC12
Domaine pattern : Prosite (Expaxy)ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)Znf_MYND   
Domain families : Pfam (Sanger)zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam01753   
Conserved Domain (NCBI)MSS51
DMDM Disease mutations118490
Blocks (Seattle)MSS51
SuperfamilyQ4VC12
Human Protein AtlasENSG00000166343
Peptide AtlasQ4VC12
HPRD15742
IPIIPI00554690   IPI00847276   IPI00847688   IPI00979076   
Protein Interaction databases
DIP (DOE-UCLA)Q4VC12
IntAct (EBI)Q4VC12
FunCoupENSG00000166343
BioGRIDMSS51
STRING (EMBL)MSS51
ZODIACMSS51
Ontologies - Pathways
QuickGOQ4VC12
Ontology : AmiGOsocial behavior  metal ion binding  
Ontology : EGO-EBIsocial behavior  metal ion binding  
NDEx NetworkMSS51
Atlas of Cancer Signalling NetworkMSS51
Wikipedia pathwaysMSS51
Orthology - Evolution
OrthoDB118490
GeneTree (enSembl)ENSG00000166343
Phylogenetic Trees/Animal Genes : TreeFamMSS51
HOVERGENQ4VC12
HOGENOMQ4VC12
Homologs : HomoloGeneMSS51
Homology/Alignments : Family Browser (UCSC)MSS51
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMSS51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MSS51
dbVarMSS51
ClinVarMSS51
1000_GenomesMSS51 
Exome Variant ServerMSS51
ExAC (Exome Aggregation Consortium)MSS51 (select the gene name)
Genetic variants : HAPMAP118490
Genomic Variants (DGV)MSS51 [DGVbeta]
DECIPHERMSS51 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMSS51 
Mutations
ICGC Data PortalMSS51 
TCGA Data PortalMSS51 
Broad Tumor PortalMSS51
OASIS PortalMSS51 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMSS51
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MSS51
DgiDB (Drug Gene Interaction Database)MSS51
DoCM (Curated mutations)MSS51 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MSS51 (select a term)
intoGenMSS51
Cancer3DMSS51(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614773   
Orphanet
MedgenMSS51
Genetic Testing Registry MSS51
NextProtQ4VC12 [Medical]
TSGene118490
GENETestsMSS51
Target ValidationMSS51
Huge Navigator MSS51 [HugePedia]
snp3D : Map Gene to Disease118490
BioCentury BCIQMSS51
ClinGenMSS51
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118490
Chemical/Pharm GKB GenePA134886837
Clinical trialMSS51
Miscellaneous
canSAR (ICR)MSS51 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMSS51
EVEXMSS51
GoPubMedMSS51
iHOPMSS51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:22 CEST 2017

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