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MT1DP (metallothionein 1D, pseudogene)

Identity

Alias_namesmetallothionein 1D, pseudogene
metallothionein 1D, pseudogene (functional)
Alias_symbol (synonym)MTM
Other alias
HGNC (Hugo) MT1DP
LocusID (NCBI) 326343
Atlas_Id 55308
Location 16q12.2  [Link to chromosome band 16q12]
Location_base_pair Starts at 56677599 and ends at 56679160 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
STEAP3 (2q14.2) / MT1DP (16q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MT1DP   7396
Cards
Entrez_Gene (NCBI)MT1DP  326343  metallothionein 1D, pseudogene
AliasesMTM
GeneCards (Weizmann)MT1DP
Ensembl hg19 (Hinxton) [Gene_View]  chr16:56677599-56679160 [Contig_View]  MT1DP [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:56677599-56679160 [Contig_View]  MT1DP [Vega]
TCGA cBioPortalMT1DP
AceView (NCBI)MT1DP
Genatlas (Paris)MT1DP
WikiGenes326343
SOURCE (Princeton)MT1DP
Genetics Home Reference (NIH)MT1DP
Genomic and cartography
GoldenPath hg19 (UCSC)MT1DP  -     chr16:56677599-56679160 +  16q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MT1DP  -     16q12.2   [Description]    (hg38-Dec_2013)
EnsemblMT1DP - 16q12.2 [CytoView hg19]  MT1DP - 16q12.2 [CytoView hg38]
Mapping of homologs : NCBIMT1DP [Mapview hg19]  MT1DP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF348999 BC130315 BC130317 BG181336
RefSeq transcript (Entrez)NM_175620
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)MT1DP
Cluster EST : UnigeneHs.679600 [ NCBI ]
CGAP (NCI)Hs.679600
Gene ExpressionMT1DP [ NCBI-GEO ]   MT1DP [ EBI - ARRAY_EXPRESS ]   MT1DP [ SEEK ]   MT1DP [ MEM ]
Gene Expression Viewer (FireBrowse)MT1DP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)326343
GTEX Portal (Tissue expression)MT1DP
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L3X4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L3X4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L3X4
Splice isoforms : SwissVarA1L3X4
PhosPhoSitePlusA1L3X4
Domains : Interpro (EBI)Metalthion    Metalthion_dom    Metalthion_dom_vert    Metalthion_vert   
Domain families : Pfam (Sanger)Metallothio (PF00131)   
Domain families : Pfam (NCBI)pfam00131   
Conserved Domain (NCBI)MT1DP
DMDM Disease mutations326343
Blocks (Seattle)MT1DP
SuperfamilyA1L3X4
Peptide AtlasA1L3X4
HPRD17610
IPIIPI00329471   
Protein Interaction databases
DIP (DOE-UCLA)A1L3X4
IntAct (EBI)A1L3X4
BioGRIDMT1DP
STRING (EMBL)MT1DP
ZODIACMT1DP
Ontologies - Pathways
QuickGOA1L3X4
Ontology : AmiGOprotein binding  metal ion binding  
Ontology : EGO-EBIprotein binding  metal ion binding  
NDEx NetworkMT1DP
Atlas of Cancer Signalling NetworkMT1DP
Wikipedia pathwaysMT1DP
Orthology - Evolution
OrthoDB326343
Phylogenetic Trees/Animal Genes : TreeFamMT1DP
HOVERGENA1L3X4
HOGENOMA1L3X4
Homologs : HomoloGeneMT1DP
Homology/Alignments : Family Browser (UCSC)MT1DP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMT1DP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MT1DP
dbVarMT1DP
ClinVarMT1DP
1000_GenomesMT1DP 
Exome Variant ServerMT1DP
ExAC (Exome Aggregation Consortium)MT1DP (select the gene name)
Genetic variants : HAPMAP326343
Genomic Variants (DGV)MT1DP [DGVbeta]
DECIPHER (Syndromes)16:56677599-56679160  
CONAN: Copy Number AnalysisMT1DP 
Mutations
ICGC Data PortalMT1DP 
TCGA Data PortalMT1DP 
Broad Tumor PortalMT1DP
OASIS PortalMT1DP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMT1DP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MT1DP
DgiDB (Drug Gene Interaction Database)MT1DP
DoCM (Curated mutations)MT1DP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MT1DP (select a term)
intoGenMT1DP
Cancer3DMT1DP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMT1DP
Genetic Testing Registry MT1DP
NextProtA1L3X4 [Medical]
TSGene326343
GENETestsMT1DP
Huge Navigator MT1DP [HugePedia]
snp3D : Map Gene to Disease326343
BioCentury BCIQMT1DP
ClinGenMT1DP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD326343
Chemical/Pharm GKB GenePA31201
Clinical trialMT1DP
Miscellaneous
canSAR (ICR)MT1DP (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMT1DP
EVEXMT1DP
GoPubMedMT1DP
iHOPMT1DP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:11:10 CEST 2017

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