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MT1E (metallothionein 1E)

Identity

Alias_namesMT1
Alias_symbol (synonym)MTD
Other aliasMT-1E
MT-IE
HGNC (Hugo) MT1E
LocusID (NCBI) 4493
Atlas_Id 50997
Location 16q13  [Link to chromosome band 16q13]
Location_base_pair Starts at 56625673 and ends at 56627113 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MT1E   7397
Cards
Entrez_Gene (NCBI)MT1E  4493  metallothionein 1E
AliasesMT-1E; MT-IE; MT1; MTD
GeneCards (Weizmann)MT1E
Ensembl hg19 (Hinxton)ENSG00000169715 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169715 [Gene_View]  chr16:56625673-56627113 [Contig_View]  MT1E [Vega]
ICGC DataPortalENSG00000169715
TCGA cBioPortalMT1E
AceView (NCBI)MT1E
Genatlas (Paris)MT1E
WikiGenes4493
SOURCE (Princeton)MT1E
Genetics Home Reference (NIH)MT1E
Genomic and cartography
GoldenPath hg38 (UCSC)MT1E  -     chr16:56625673-56627113 +  16q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MT1E  -     16q13   [Description]    (hg19-Feb_2009)
EnsemblMT1E - 16q13 [CytoView hg19]  MT1E - 16q13 [CytoView hg38]
Mapping of homologs : NCBIMT1E [Mapview hg19]  MT1E [Mapview hg38]
OMIM156351   
Gene and transcription
Genbank (Entrez)AF495759 BC009699 BC062734 BC131609 HQ448741
RefSeq transcript (Entrez)NM_175617
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MT1E
Cluster EST : UnigeneHs.744893 [ NCBI ]
CGAP (NCI)Hs.744893
Alternative Splicing GalleryENSG00000169715
Gene ExpressionMT1E [ NCBI-GEO ]   MT1E [ EBI - ARRAY_EXPRESS ]   MT1E [ SEEK ]   MT1E [ MEM ]
Gene Expression Viewer (FireBrowse)MT1E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4493
GTEX Portal (Tissue expression)MT1E
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04732   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04732  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04732
Splice isoforms : SwissVarP04732
PhosPhoSitePlusP04732
Domaine pattern : Prosite (Expaxy)METALLOTHIONEIN_VRT (PS00203)   
Domains : Interpro (EBI)Metalthion    Metalthion_dom    Metalthion_dom_vert    Metalthion_vert    Metalthion_vert_metal_BS   
Domain families : Pfam (Sanger)Metallothio (PF00131)   
Domain families : Pfam (NCBI)pfam00131   
Conserved Domain (NCBI)MT1E
DMDM Disease mutations4493
Blocks (Seattle)MT1E
SuperfamilyP04732
Human Protein AtlasENSG00000169715
Peptide AtlasP04732
HPRD01126
IPIIPI00025461   IPI00152456   IPI00386275   IPI00329473   
Protein Interaction databases
DIP (DOE-UCLA)P04732
IntAct (EBI)P04732
FunCoupENSG00000169715
BioGRIDMT1E
STRING (EMBL)MT1E
ZODIACMT1E
Ontologies - Pathways
QuickGOP04732
Ontology : AmiGOnucleus  cytoplasm  zinc ion binding  negative regulation of growth  perinuclear region of cytoplasm  cellular response to cadmium ion  cellular response to zinc ion  
Ontology : EGO-EBInucleus  cytoplasm  zinc ion binding  negative regulation of growth  perinuclear region of cytoplasm  cellular response to cadmium ion  cellular response to zinc ion  
Pathways : KEGGMineral absorption   
NDEx NetworkMT1E
Atlas of Cancer Signalling NetworkMT1E
Wikipedia pathwaysMT1E
Orthology - Evolution
OrthoDB4493
GeneTree (enSembl)ENSG00000169715
Phylogenetic Trees/Animal Genes : TreeFamMT1E
HOVERGENP04732
HOGENOMP04732
Homologs : HomoloGeneMT1E
Homology/Alignments : Family Browser (UCSC)MT1E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMT1E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MT1E
dbVarMT1E
ClinVarMT1E
1000_GenomesMT1E 
Exome Variant ServerMT1E
ExAC (Exome Aggregation Consortium)MT1E (select the gene name)
Genetic variants : HAPMAP4493
Genomic Variants (DGV)MT1E [DGVbeta]
DECIPHERMT1E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMT1E 
Mutations
ICGC Data PortalMT1E 
TCGA Data PortalMT1E 
Broad Tumor PortalMT1E
OASIS PortalMT1E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMT1E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMT1E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MT1E
DgiDB (Drug Gene Interaction Database)MT1E
DoCM (Curated mutations)MT1E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MT1E (select a term)
intoGenMT1E
Cancer3DMT1E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM156351   
Orphanet
MedgenMT1E
Genetic Testing Registry MT1E
NextProtP04732 [Medical]
TSGene4493
GENETestsMT1E
Target ValidationMT1E
Huge Navigator MT1E [HugePedia]
snp3D : Map Gene to Disease4493
BioCentury BCIQMT1E
ClinGenMT1E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4493
Chemical/Pharm GKB GenePA31202
Clinical trialMT1E
Miscellaneous
canSAR (ICR)MT1E (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMT1E
EVEXMT1E
GoPubMedMT1E
iHOPMT1E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:08:18 CEST 2017

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