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MT1F (metallothionein 1F)

Identity

Alias_namesMT1
Other alias
HGNC (Hugo) MT1F
LocusID (NCBI) 4494
Atlas_Id 45639
Location 16q13  [Link to chromosome band 16q13]
Location_base_pair Starts at 56657943 and ends at 56659303 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DDX42 (17q23.3) / MT1F (16q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MT1F   7398
Cards
Entrez_Gene (NCBI)MT1F  4494  metallothionein 1F
AliasesMT1
GeneCards (Weizmann)MT1F
Ensembl hg19 (Hinxton)ENSG00000198417 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198417 [Gene_View]  ENSG00000198417 [Sequence]  chr16:56657943-56659303 [Contig_View]  MT1F [Vega]
ICGC DataPortalENSG00000198417
TCGA cBioPortalMT1F
AceView (NCBI)MT1F
Genatlas (Paris)MT1F
WikiGenes4494
SOURCE (Princeton)MT1F
Genetics Home Reference (NIH)MT1F
Genomic and cartography
GoldenPath hg38 (UCSC)MT1F  -     chr16:56657943-56659303 +  16q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MT1F  -     16q13   [Description]    (hg19-Feb_2009)
EnsemblMT1F - 16q13 [CytoView hg19]  MT1F - 16q13 [CytoView hg38]
Mapping of homologs : NCBIMT1F [Mapview hg19]  MT1F [Mapview hg38]
OMIM156352   
Gene and transcription
Genbank (Entrez)BC029453 BC108722 BM919862 BQ939879 W78077
RefSeq transcript (Entrez)NM_001301272 NM_005949
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MT1F
Cluster EST : UnigeneHs.513626 [ NCBI ]
CGAP (NCI)Hs.513626
Alternative Splicing GalleryENSG00000198417
Gene ExpressionMT1F [ NCBI-GEO ]   MT1F [ EBI - ARRAY_EXPRESS ]   MT1F [ SEEK ]   MT1F [ MEM ]
Gene Expression Viewer (FireBrowse)MT1F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4494
GTEX Portal (Tissue expression)MT1F
Human Protein AtlasENSG00000198417-MT1F [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04733   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04733  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04733
Splice isoforms : SwissVarP04733
PhosPhoSitePlusP04733
Domaine pattern : Prosite (Expaxy)METALLOTHIONEIN_VRT (PS00203)   
Domains : Interpro (EBI)Metalthion    Metalthion_dom_sf    Metalthion_dom_sf_vert    Metalthion_vert    Metalthion_vert_metal_BS   
Domain families : Pfam (Sanger)Metallothio (PF00131)   
Domain families : Pfam (NCBI)pfam00131   
Conserved Domain (NCBI)MT1F
DMDM Disease mutations4494
Blocks (Seattle)MT1F
SuperfamilyP04733
Human Protein Atlas [tissue]ENSG00000198417-MT1F [tissue]
Peptide AtlasP04733
HPRD01127
IPIIPI00025464   IPI00872143   
Protein Interaction databases
DIP (DOE-UCLA)P04733
IntAct (EBI)P04733
FunCoupENSG00000198417
BioGRIDMT1F
STRING (EMBL)MT1F
ZODIACMT1F
Ontologies - Pathways
QuickGOP04733
Ontology : AmiGOprotein binding  nucleus  nucleus  cytoplasm  cytoplasm  cellular zinc ion homeostasis  zinc ion binding  detoxification of copper ion  negative regulation of growth  metal ion binding  perinuclear region of cytoplasm  cellular response to cadmium ion  cellular response to cadmium ion  cellular response to copper ion  cellular response to zinc ion  cellular response to zinc ion  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  cytoplasm  cytoplasm  cellular zinc ion homeostasis  zinc ion binding  detoxification of copper ion  negative regulation of growth  metal ion binding  perinuclear region of cytoplasm  cellular response to cadmium ion  cellular response to cadmium ion  cellular response to copper ion  cellular response to zinc ion  cellular response to zinc ion  
Pathways : KEGGMineral absorption   
NDEx NetworkMT1F
Atlas of Cancer Signalling NetworkMT1F
Wikipedia pathwaysMT1F
Orthology - Evolution
OrthoDB4494
GeneTree (enSembl)ENSG00000198417
Phylogenetic Trees/Animal Genes : TreeFamMT1F
HOVERGENP04733
HOGENOMP04733
Homologs : HomoloGeneMT1F
Homology/Alignments : Family Browser (UCSC)MT1F
Gene fusions - Rearrangements
Fusion : QuiverMT1F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMT1F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MT1F
dbVarMT1F
ClinVarMT1F
1000_GenomesMT1F 
Exome Variant ServerMT1F
ExAC (Exome Aggregation Consortium)ENSG00000198417
GNOMAD BrowserENSG00000198417
Varsome BrowserMT1F
Genetic variants : HAPMAP4494
Genomic Variants (DGV)MT1F [DGVbeta]
DECIPHERMT1F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMT1F 
Mutations
ICGC Data PortalMT1F 
TCGA Data PortalMT1F 
Broad Tumor PortalMT1F
OASIS PortalMT1F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMT1F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMT1F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MT1F
DgiDB (Drug Gene Interaction Database)MT1F
DoCM (Curated mutations)MT1F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MT1F (select a term)
intoGenMT1F
Cancer3DMT1F(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM156352   
Orphanet
DisGeNETMT1F
MedgenMT1F
Genetic Testing Registry MT1F
NextProtP04733 [Medical]
TSGene4494
GENETestsMT1F
Target ValidationMT1F
Huge Navigator MT1F [HugePedia]
snp3D : Map Gene to Disease4494
BioCentury BCIQMT1F
ClinGenMT1F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4494
Chemical/Pharm GKB GenePA31203
Clinical trialMT1F
Miscellaneous
canSAR (ICR)MT1F (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMT1F
EVEXMT1F
GoPubMedMT1F
iHOPMT1F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:24:04 CET 2018

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