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MT1G (metallothionein 1G)

Identity

Alias_namesMT1
Alias_symbol (synonym)MT1K
Other alias
HGNC (Hugo) MT1G
LocusID (NCBI) 4495
Atlas_Id 43956
Location 16q13  [Link to chromosome band 16q13]
Location_base_pair Starts at 56666735 and ends at 56668065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C3 (19p13.3) / MT1G (16q13)MT1G (16q13) / DAO (12q24.11)WNK4 (17q21.31) / MT1G (16q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MT1G   7399
Cards
Entrez_Gene (NCBI)MT1G  4495  metallothionein 1G
AliasesMT1; MT1K
GeneCards (Weizmann)MT1G
Ensembl hg19 (Hinxton)ENSG00000125144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125144 [Gene_View]  ENSG00000125144 [Sequence]  chr16:56666735-56668065 [Contig_View]  MT1G [Vega]
ICGC DataPortalENSG00000125144
TCGA cBioPortalMT1G
AceView (NCBI)MT1G
Genatlas (Paris)MT1G
WikiGenes4495
SOURCE (Princeton)MT1G
Genetics Home Reference (NIH)MT1G
Genomic and cartography
GoldenPath hg38 (UCSC)MT1G  -     chr16:56666735-56668065 -  16q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MT1G  -     16q13   [Description]    (hg19-Feb_2009)
EnsemblMT1G - 16q13 [CytoView hg19]  MT1G - 16q13 [CytoView hg38]
Mapping of homologs : NCBIMT1G [Mapview hg19]  MT1G [Mapview hg38]
OMIM156353   
Gene and transcription
Genbank (Entrez)BC005311 BC020757 BC035287 BC048334 BM817643
RefSeq transcript (Entrez)NM_001301267 NM_005950
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MT1G
Cluster EST : UnigeneHs.433391 [ NCBI ]
CGAP (NCI)Hs.433391
Alternative Splicing GalleryENSG00000125144
Gene ExpressionMT1G [ NCBI-GEO ]   MT1G [ EBI - ARRAY_EXPRESS ]   MT1G [ SEEK ]   MT1G [ MEM ]
Gene Expression Viewer (FireBrowse)MT1G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4495
GTEX Portal (Tissue expression)MT1G
Human Protein AtlasENSG00000125144-MT1G [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13640   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP13640  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP13640
Splice isoforms : SwissVarP13640
PhosPhoSitePlusP13640
Domaine pattern : Prosite (Expaxy)METALLOTHIONEIN_VRT (PS00203)   
Domains : Interpro (EBI)Metalthion    Metalthion_dom_sf    Metalthion_dom_sf_vert    Metalthion_vert    Metalthion_vert_metal_BS   
Domain families : Pfam (Sanger)Metallothio (PF00131)   
Domain families : Pfam (NCBI)pfam00131   
Conserved Domain (NCBI)MT1G
DMDM Disease mutations4495
Blocks (Seattle)MT1G
SuperfamilyP13640
Human Protein Atlas [tissue]ENSG00000125144-MT1G [tissue]
Peptide AtlasP13640
HPRD11827
IPIIPI00008752   IPI00413064   
Protein Interaction databases
DIP (DOE-UCLA)P13640
IntAct (EBI)P13640
FunCoupENSG00000125144
BioGRIDMT1G
STRING (EMBL)MT1G
ZODIACMT1G
Ontologies - Pathways
QuickGOP13640
Ontology : AmiGOprotein binding  nucleus  nucleus  cytoplasm  cytoplasm  cellular zinc ion homeostasis  zinc ion binding  detoxification of copper ion  monocyte differentiation  cellular response to vascular endothelial growth factor stimulus  monocyte activation  negative regulation of growth  metal ion binding  perinuclear region of cytoplasm  cellular response to cadmium ion  cellular response to cadmium ion  cellular response to copper ion  cellular response to copper ion  cellular response to zinc ion  cellular response to zinc ion  cellular response to zinc ion  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  cytoplasm  cytoplasm  cellular zinc ion homeostasis  zinc ion binding  detoxification of copper ion  monocyte differentiation  cellular response to vascular endothelial growth factor stimulus  monocyte activation  negative regulation of growth  metal ion binding  perinuclear region of cytoplasm  cellular response to cadmium ion  cellular response to cadmium ion  cellular response to copper ion  cellular response to copper ion  cellular response to zinc ion  cellular response to zinc ion  cellular response to zinc ion  
Pathways : KEGGMineral absorption   
NDEx NetworkMT1G
Atlas of Cancer Signalling NetworkMT1G
Wikipedia pathwaysMT1G
Orthology - Evolution
OrthoDB4495
GeneTree (enSembl)ENSG00000125144
Phylogenetic Trees/Animal Genes : TreeFamMT1G
HOVERGENP13640
HOGENOMP13640
Homologs : HomoloGeneMT1G
Homology/Alignments : Family Browser (UCSC)MT1G
Gene fusions - Rearrangements
Fusion : QuiverMT1G
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMT1G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MT1G
dbVarMT1G
ClinVarMT1G
1000_GenomesMT1G 
Exome Variant ServerMT1G
ExAC (Exome Aggregation Consortium)ENSG00000125144
GNOMAD BrowserENSG00000125144
Varsome BrowserMT1G
Genetic variants : HAPMAP4495
Genomic Variants (DGV)MT1G [DGVbeta]
DECIPHERMT1G [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMT1G 
Mutations
ICGC Data PortalMT1G 
TCGA Data PortalMT1G 
Broad Tumor PortalMT1G
OASIS PortalMT1G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMT1G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMT1G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MT1G
DgiDB (Drug Gene Interaction Database)MT1G
DoCM (Curated mutations)MT1G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MT1G (select a term)
intoGenMT1G
Cancer3DMT1G(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM156353   
Orphanet
DisGeNETMT1G
MedgenMT1G
Genetic Testing Registry MT1G
NextProtP13640 [Medical]
TSGene4495
GENETestsMT1G
Target ValidationMT1G
Huge Navigator MT1G [HugePedia]
snp3D : Map Gene to Disease4495
BioCentury BCIQMT1G
ClinGenMT1G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4495
Chemical/Pharm GKB GenePA31204
Clinical trialMT1G
Miscellaneous
canSAR (ICR)MT1G (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMT1G
EVEXMT1G
GoPubMedMT1G
iHOPMT1G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:24:05 CET 2018

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