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MT1H (metallothionein 1H)

Identity

Alias_namesMT1
Other aliasMT-0
MT-1H
MT-IH
HGNC (Hugo) MT1H
LocusID (NCBI) 4496
Atlas_Id 41440
Location 16q13  [Link to chromosome band 16q13]
Location_base_pair Starts at 56669814 and ends at 56671129 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MT1H   7400
Cards
Entrez_Gene (NCBI)MT1H  4496  metallothionein 1H
AliasesMT-0; MT-1H; MT-IH; MT1
GeneCards (Weizmann)MT1H
Ensembl hg19 (Hinxton)ENSG00000205358 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205358 [Gene_View]  chr16:56669814-56671129 [Contig_View]  MT1H [Vega]
ICGC DataPortalENSG00000205358
TCGA cBioPortalMT1H
AceView (NCBI)MT1H
Genatlas (Paris)MT1H
WikiGenes4496
SOURCE (Princeton)MT1H
Genetics Home Reference (NIH)MT1H
Genomic and cartography
GoldenPath hg38 (UCSC)MT1H  -     chr16:56669814-56671129 +  16q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MT1H  -     16q13   [Description]    (hg19-Feb_2009)
EnsemblMT1H - 16q13 [CytoView hg19]  MT1H - 16q13 [CytoView hg38]
Mapping of homologs : NCBIMT1H [Mapview hg19]  MT1H [Mapview hg38]
OMIM156354   
Gene and transcription
Genbank (Entrez)BC008408 BC059780 BC146930 BC146934 BT007171
RefSeq transcript (Entrez)NM_005951
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MT1H
Cluster EST : UnigeneHs.438462 [ NCBI ]
CGAP (NCI)Hs.438462
Alternative Splicing GalleryENSG00000205358
Gene ExpressionMT1H [ NCBI-GEO ]   MT1H [ EBI - ARRAY_EXPRESS ]   MT1H [ SEEK ]   MT1H [ MEM ]
Gene Expression Viewer (FireBrowse)MT1H [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4496
GTEX Portal (Tissue expression)MT1H
Protein : pattern, domain, 3D structure
UniProt/SwissProtP80294   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP80294  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP80294
Splice isoforms : SwissVarP80294
PhosPhoSitePlusP80294
Domaine pattern : Prosite (Expaxy)METALLOTHIONEIN_VRT (PS00203)   
Domains : Interpro (EBI)Metalthion    Metalthion_dom    Metalthion_dom_vert    Metalthion_vert    Metalthion_vert_metal_BS   
Domain families : Pfam (Sanger)Metallothio (PF00131)   
Domain families : Pfam (NCBI)pfam00131   
Conserved Domain (NCBI)MT1H
DMDM Disease mutations4496
Blocks (Seattle)MT1H
SuperfamilyP80294
Human Protein AtlasENSG00000205358
Peptide AtlasP80294
HPRD01128
IPIIPI00008750   
Protein Interaction databases
DIP (DOE-UCLA)P80294
IntAct (EBI)P80294
FunCoupENSG00000205358
BioGRIDMT1H
STRING (EMBL)MT1H
ZODIACMT1H
Ontologies - Pathways
QuickGOP80294
Ontology : AmiGOprotein binding  nucleus  cytoplasm  zinc ion binding  negative regulation of growth  perinuclear region of cytoplasm  cellular response to cadmium ion  cellular response to zinc ion  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  zinc ion binding  negative regulation of growth  perinuclear region of cytoplasm  cellular response to cadmium ion  cellular response to zinc ion  
Pathways : KEGGMineral absorption   
NDEx NetworkMT1H
Atlas of Cancer Signalling NetworkMT1H
Wikipedia pathwaysMT1H
Orthology - Evolution
OrthoDB4496
GeneTree (enSembl)ENSG00000205358
Phylogenetic Trees/Animal Genes : TreeFamMT1H
HOVERGENP80294
HOGENOMP80294
Homologs : HomoloGeneMT1H
Homology/Alignments : Family Browser (UCSC)MT1H
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMT1H [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MT1H
dbVarMT1H
ClinVarMT1H
1000_GenomesMT1H 
Exome Variant ServerMT1H
ExAC (Exome Aggregation Consortium)MT1H (select the gene name)
Genetic variants : HAPMAP4496
Genomic Variants (DGV)MT1H [DGVbeta]
DECIPHERMT1H [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMT1H 
Mutations
ICGC Data PortalMT1H 
TCGA Data PortalMT1H 
Broad Tumor PortalMT1H
OASIS PortalMT1H [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMT1H  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMT1H
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MT1H
DgiDB (Drug Gene Interaction Database)MT1H
DoCM (Curated mutations)MT1H (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MT1H (select a term)
intoGenMT1H
Cancer3DMT1H(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM156354   
Orphanet
MedgenMT1H
Genetic Testing Registry MT1H
NextProtP80294 [Medical]
TSGene4496
GENETestsMT1H
Target ValidationMT1H
Huge Navigator MT1H [HugePedia]
snp3D : Map Gene to Disease4496
BioCentury BCIQMT1H
ClinGenMT1H
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4496
Chemical/Pharm GKB GenePA31205
Clinical trialMT1H
Miscellaneous
canSAR (ICR)MT1H (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMT1H
EVEXMT1H
GoPubMedMT1H
iHOPMT1H
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:08:18 CEST 2017

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