Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MT1HL1 (metallothionein 1H like 1)

Identity

Alias_namesMT1P2
metallothionein 1 pseudogene 2
Other alias
HGNC (Hugo) MT1HL1
LocusID (NCBI) 645745
Atlas_Id 70530
Location 1q43  [Link to chromosome band 1q43]
Location_base_pair Starts at 237004103 and ends at 237004418 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MT1HL1   31864
Cards
Entrez_Gene (NCBI)MT1HL1  645745  metallothionein 1H like 1
AliasesMT1P2
GeneCards (Weizmann)MT1HL1
Ensembl hg19 (Hinxton)ENSG00000244020 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244020 [Gene_View]  chr1:237004103-237004418 [Contig_View]  MT1HL1 [Vega]
ICGC DataPortalENSG00000244020
TCGA cBioPortalMT1HL1
AceView (NCBI)MT1HL1
Genatlas (Paris)MT1HL1
WikiGenes645745
SOURCE (Princeton)MT1HL1
Genetics Home Reference (NIH)MT1HL1
Genomic and cartography
GoldenPath hg38 (UCSC)MT1HL1  -     chr1:237004103-237004418 -  1q43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MT1HL1  -     1q43   [Description]    (hg19-Feb_2009)
EnsemblMT1HL1 - 1q43 [CytoView hg19]  MT1HL1 - 1q43 [CytoView hg38]
Mapping of homologs : NCBIMT1HL1 [Mapview hg19]  MT1HL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF333388 BC133030 BC133032
RefSeq transcript (Entrez)NM_001039954 NM_001276687
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MT1HL1
Cluster EST : UnigeneHs.632513 [ NCBI ]
CGAP (NCI)Hs.632513
Alternative Splicing GalleryENSG00000244020
Gene ExpressionMT1HL1 [ NCBI-GEO ]   MT1HL1 [ EBI - ARRAY_EXPRESS ]   MT1HL1 [ SEEK ]   MT1HL1 [ MEM ]
Gene Expression Viewer (FireBrowse)MT1HL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645745
GTEX Portal (Tissue expression)MT1HL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DM35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DM35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DM35
Splice isoforms : SwissVarP0DM35
PhosPhoSitePlusP0DM35
Domains : Interpro (EBI)Metalthion    Metalthion_dom    Metalthion_dom_vert    Metalthion_vert    TNFR/NGFR_Cys_rich_reg   
Domain families : Pfam (Sanger)Metallothio (PF00131)   
Domain families : Pfam (NCBI)pfam00131   
Conserved Domain (NCBI)MT1HL1
DMDM Disease mutations645745
Blocks (Seattle)MT1HL1
SuperfamilyP0DM35
Human Protein AtlasENSG00000244020
Peptide AtlasP0DM35
IPIIPI00939954   
Protein Interaction databases
DIP (DOE-UCLA)P0DM35
IntAct (EBI)P0DM35
FunCoupENSG00000244020
BioGRIDMT1HL1
STRING (EMBL)MT1HL1
ZODIACMT1HL1
Ontologies - Pathways
QuickGOP0DM35
Ontology : AmiGOmetal ion binding  
Ontology : EGO-EBImetal ion binding  
NDEx NetworkMT1HL1
Atlas of Cancer Signalling NetworkMT1HL1
Wikipedia pathwaysMT1HL1
Orthology - Evolution
OrthoDB645745
GeneTree (enSembl)ENSG00000244020
Phylogenetic Trees/Animal Genes : TreeFamMT1HL1
HOVERGENP0DM35
HOGENOMP0DM35
Homologs : HomoloGeneMT1HL1
Homology/Alignments : Family Browser (UCSC)MT1HL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMT1HL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MT1HL1
dbVarMT1HL1
ClinVarMT1HL1
1000_GenomesMT1HL1 
Exome Variant ServerMT1HL1
ExAC (Exome Aggregation Consortium)MT1HL1 (select the gene name)
Genetic variants : HAPMAP645745
Genomic Variants (DGV)MT1HL1 [DGVbeta]
DECIPHERMT1HL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMT1HL1 
Mutations
ICGC Data PortalMT1HL1 
TCGA Data PortalMT1HL1 
Broad Tumor PortalMT1HL1
OASIS PortalMT1HL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMT1HL1
BioMutasearch MT1HL1
DgiDB (Drug Gene Interaction Database)MT1HL1
DoCM (Curated mutations)MT1HL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MT1HL1 (select a term)
intoGenMT1HL1
Cancer3DMT1HL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMT1HL1
Genetic Testing Registry MT1HL1
NextProtP0DM35 [Medical]
TSGene645745
GENETestsMT1HL1
Huge Navigator MT1HL1 [HugePedia]
snp3D : Map Gene to Disease645745
BioCentury BCIQMT1HL1
ClinGenMT1HL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645745
Chemical/Pharm GKB GenePA166049006
Clinical trialMT1HL1
Miscellaneous
canSAR (ICR)MT1HL1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMT1HL1
EVEXMT1HL1
GoPubMedMT1HL1
iHOPMT1HL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:44:04 CEST 2017

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