Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MT1L (metallothionein 1L, pseudogene)

Identity

Alias_namesMT1
Alias_symbol (synonym)MTF
MT1R
Other alias
HGNC (Hugo) MT1L
LocusID (NCBI) 4500
Atlas_Id 70533
Location 16q13  [Link to chromosome band 16q13]
Location_base_pair Starts at 56617461 and ends at 56618818 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MT1L   7404
Cards
Entrez_Gene (NCBI)MT1L  4500  metallothionein 1L, pseudogene
AliasesMT1; MT1R; MTF
GeneCards (Weizmann)MT1L
Ensembl hg19 (Hinxton)ENSG00000260549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260549 [Gene_View]  chr16:56617461-56618818 [Contig_View]  MT1L [Vega]
ICGC DataPortalENSG00000260549
TCGA cBioPortalMT1L
AceView (NCBI)MT1L
Genatlas (Paris)MT1L
WikiGenes4500
SOURCE (Princeton)MT1L
Genetics Home Reference (NIH)MT1L
Genomic and cartography
GoldenPath hg38 (UCSC)MT1L  -     chr16:56617461-56618818 +  16q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MT1L  -     16q13   [Description]    (hg19-Feb_2009)
EnsemblMT1L - 16q13 [CytoView hg19]  MT1L - 16q13 [CytoView hg38]
Mapping of homologs : NCBIMT1L [Mapview hg19]  MT1L [Mapview hg38]
OMIM156358   
Gene and transcription
Genbank (Entrez)BC070351 BG747999 X97261
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MT1L
Cluster EST : UnigeneHs.647358 [ NCBI ]
CGAP (NCI)Hs.647358
Alternative Splicing GalleryENSG00000260549
Gene ExpressionMT1L [ NCBI-GEO ]   MT1L [ EBI - ARRAY_EXPRESS ]   MT1L [ SEEK ]   MT1L [ MEM ]
Gene Expression Viewer (FireBrowse)MT1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4500
GTEX Portal (Tissue expression)MT1L
Human Protein AtlasENSG00000260549-MT1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ93083   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ93083  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ93083
Splice isoforms : SwissVarQ93083
PhosPhoSitePlusQ93083
Domaine pattern : Prosite (Expaxy)METALLOTHIONEIN_VRT (PS00203)   
Domains : Interpro (EBI)Metalthion    Metalthion_dom    Metalthion_dom_vert    Metalthion_vert    Metalthion_vert_metal_BS   
Domain families : Pfam (Sanger)Metallothio (PF00131)   
Domain families : Pfam (NCBI)pfam00131   
Conserved Domain (NCBI)MT1L
DMDM Disease mutations4500
Blocks (Seattle)MT1L
SuperfamilyQ93083
Human Protein Atlas [tissue]ENSG00000260549-MT1L [tissue]
Peptide AtlasQ93083
Protein Interaction databases
DIP (DOE-UCLA)Q93083
IntAct (EBI)Q93083
FunCoupENSG00000260549
BioGRIDMT1L
STRING (EMBL)MT1L
ZODIACMT1L
Ontologies - Pathways
QuickGOQ93083
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMT1L
Atlas of Cancer Signalling NetworkMT1L
Wikipedia pathwaysMT1L
Orthology - Evolution
OrthoDB4500
GeneTree (enSembl)ENSG00000260549
Phylogenetic Trees/Animal Genes : TreeFamMT1L
HOVERGENQ93083
HOGENOMQ93083
Homologs : HomoloGeneMT1L
Homology/Alignments : Family Browser (UCSC)MT1L
Gene fusions - Rearrangements
Fusion: Tumor Portal MT1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMT1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MT1L
dbVarMT1L
ClinVarMT1L
1000_GenomesMT1L 
Exome Variant ServerMT1L
ExAC (Exome Aggregation Consortium)ENSG00000260549
GNOMAD BrowserENSG00000260549
Genetic variants : HAPMAP4500
Genomic Variants (DGV)MT1L [DGVbeta]
DECIPHERMT1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMT1L 
Mutations
ICGC Data PortalMT1L 
TCGA Data PortalMT1L 
Broad Tumor PortalMT1L
OASIS PortalMT1L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMT1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MT1L
DgiDB (Drug Gene Interaction Database)MT1L
DoCM (Curated mutations)MT1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MT1L (select a term)
intoGenMT1L
Cancer3DMT1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM156358   
Orphanet
MedgenMT1L
Genetic Testing Registry MT1L
NextProtQ93083 [Medical]
TSGene4500
GENETestsMT1L
Target ValidationMT1L
Huge Navigator MT1L [HugePedia]
snp3D : Map Gene to Disease4500
BioCentury BCIQMT1L
ClinGenMT1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4500
Chemical/Pharm GKB GenePA31209
Clinical trialMT1L
Miscellaneous
canSAR (ICR)MT1L (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMT1L
EVEXMT1L
GoPubMedMT1L
iHOPMT1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:18:05 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.