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MT4 (metallothionein 4)

Identity

Alias_namesmetallothionein IV
Alias_symbol (synonym)MTIV
Other aliasMT-4
MT-IV
HGNC (Hugo) MT4
LocusID (NCBI) 84560
Atlas_Id 70535
Location 16q12.2  [Link to chromosome band 16q12]
Location_base_pair Starts at 56598961 and ends at 56602869 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ESRRG (1q41) / MT4 (16q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MT4   18705
Cards
Entrez_Gene (NCBI)MT4  84560  metallothionein 4
AliasesMT-4; MT-IV; MTIV
GeneCards (Weizmann)MT4
Ensembl hg19 (Hinxton)ENSG00000102891 [Gene_View]  chr16:56598961-56602869 [Contig_View]  MT4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000102891 [Gene_View]  chr16:56598961-56602869 [Contig_View]  MT4 [Vega]
ICGC DataPortalENSG00000102891
TCGA cBioPortalMT4
AceView (NCBI)MT4
Genatlas (Paris)MT4
WikiGenes84560
SOURCE (Princeton)MT4
Genetics Home Reference (NIH)MT4
Genomic and cartography
GoldenPath hg19 (UCSC)MT4  -     chr16:56598961-56602869 +  16q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MT4  -     16q12.2   [Description]    (hg38-Dec_2013)
EnsemblMT4 - 16q12.2 [CytoView hg19]  MT4 - 16q12.2 [CytoView hg38]
Mapping of homologs : NCBIMT4 [Mapview hg19]  MT4 [Mapview hg38]
OMIM606206   
Gene and transcription
Genbank (Entrez)BC113442 BC113444 HQ258024
RefSeq transcript (Entrez)NM_032935
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)MT4
Cluster EST : UnigeneHs.567624 [ NCBI ]
CGAP (NCI)Hs.567624
Alternative Splicing GalleryENSG00000102891
Gene ExpressionMT4 [ NCBI-GEO ]   MT4 [ EBI - ARRAY_EXPRESS ]   MT4 [ SEEK ]   MT4 [ MEM ]
Gene Expression Viewer (FireBrowse)MT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84560
GTEX Portal (Tissue expression)MT4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47944   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47944  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47944
Splice isoforms : SwissVarP47944
PhosPhoSitePlusP47944
Domains : Interpro (EBI)Metalthion_dom    Metalthion_dom_vert    Metalthion_sfam_euk    Metalthion_vert   
Domain families : Pfam (Sanger)Metallothio (PF00131)   
Domain families : Pfam (NCBI)pfam00131   
Conserved Domain (NCBI)MT4
DMDM Disease mutations84560
Blocks (Seattle)MT4
SuperfamilyP47944
Human Protein AtlasENSG00000102891
Peptide AtlasP47944
HPRD12092
IPIIPI00026892   
Protein Interaction databases
DIP (DOE-UCLA)P47944
IntAct (EBI)P47944
FunCoupENSG00000102891
BioGRIDMT4
STRING (EMBL)MT4
ZODIACMT4
Ontologies - Pathways
QuickGOP47944
Ontology : AmiGOcell  cellular metal ion homeostasis  biological_process  metal ion binding  
Ontology : EGO-EBIcell  cellular metal ion homeostasis  biological_process  metal ion binding  
NDEx NetworkMT4
Atlas of Cancer Signalling NetworkMT4
Wikipedia pathwaysMT4
Orthology - Evolution
OrthoDB84560
GeneTree (enSembl)ENSG00000102891
Phylogenetic Trees/Animal Genes : TreeFamMT4
HOVERGENP47944
HOGENOMP47944
Homologs : HomoloGeneMT4
Homology/Alignments : Family Browser (UCSC)MT4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MT4
dbVarMT4
ClinVarMT4
1000_GenomesMT4 
Exome Variant ServerMT4
ExAC (Exome Aggregation Consortium)MT4 (select the gene name)
Genetic variants : HAPMAP84560
Genomic Variants (DGV)MT4 [DGVbeta]
DECIPHER (Syndromes)16:56598961-56602869  ENSG00000102891
CONAN: Copy Number AnalysisMT4 
Mutations
ICGC Data PortalMT4 
TCGA Data PortalMT4 
Broad Tumor PortalMT4
OASIS PortalMT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MT4
DgiDB (Drug Gene Interaction Database)MT4
DoCM (Curated mutations)MT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MT4 (select a term)
intoGenMT4
Cancer3DMT4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606206   
Orphanet
MedgenMT4
Genetic Testing Registry MT4
NextProtP47944 [Medical]
TSGene84560
GENETestsMT4
Huge Navigator MT4 [HugePedia]
snp3D : Map Gene to Disease84560
BioCentury BCIQMT4
ClinGenMT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84560
Chemical/Pharm GKB GenePA38649
Clinical trialMT4
Miscellaneous
canSAR (ICR)MT4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMT4
EVEXMT4
GoPubMedMT4
iHOPMT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:34:01 CET 2017

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