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MTERF2 (mitochondrial transcription termination factor 2)

Identity

Alias_namesMTERFD3
MTERF domain containing 3
Alias_symbol (synonym)FLJ14062
Other aliasmTERFL
HGNC (Hugo) MTERF2
LocusID (NCBI) 80298
Atlas_Id 70537
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 106977291 and ends at 106987166 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTERF2   30779
Cards
Entrez_Gene (NCBI)MTERF2  80298  mitochondrial transcription termination factor 2
AliasesMTERFD3; mTERFL
GeneCards (Weizmann)MTERF2
Ensembl hg19 (Hinxton)ENSG00000120832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120832 [Gene_View]  chr12:106977291-106987166 [Contig_View]  MTERF2 [Vega]
ICGC DataPortalENSG00000120832
TCGA cBioPortalMTERF2
AceView (NCBI)MTERF2
Genatlas (Paris)MTERF2
WikiGenes80298
SOURCE (Princeton)MTERF2
Genetics Home Reference (NIH)MTERF2
Genomic and cartography
GoldenPath hg38 (UCSC)MTERF2  -     chr12:106977291-106987166 -  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MTERF2  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblMTERF2 - 12q23.3 [CytoView hg19]  MTERF2 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBIMTERF2 [Mapview hg19]  MTERF2 [Mapview hg38]
OMIM616929   
Gene and transcription
Genbank (Entrez)AK024124 AK222558 AL832827 AY008301 BC008486
RefSeq transcript (Entrez)NM_001033050 NM_025198
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MTERF2
Cluster EST : UnigeneHs.5009 [ NCBI ]
CGAP (NCI)Hs.5009
Alternative Splicing GalleryENSG00000120832
Gene ExpressionMTERF2 [ NCBI-GEO ]   MTERF2 [ EBI - ARRAY_EXPRESS ]   MTERF2 [ SEEK ]   MTERF2 [ MEM ]
Gene Expression Viewer (FireBrowse)MTERF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80298
GTEX Portal (Tissue expression)MTERF2
Human Protein AtlasENSG00000120832-MTERF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49AM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49AM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49AM1
Splice isoforms : SwissVarQ49AM1
PhosPhoSitePlusQ49AM1
Domains : Interpro (EBI)MTERF   
Domain families : Pfam (Sanger)mTERF (PF02536)   
Domain families : Pfam (NCBI)pfam02536   
Domain families : Smart (EMBL)Mterf (SM00733)  
Conserved Domain (NCBI)MTERF2
DMDM Disease mutations80298
Blocks (Seattle)MTERF2
SuperfamilyQ49AM1
Human Protein Atlas [tissue]ENSG00000120832-MTERF2 [tissue]
Peptide AtlasQ49AM1
HPRD17431
IPIIPI00018781   IPI01021416   IPI01022717   IPI01022225   
Protein Interaction databases
DIP (DOE-UCLA)Q49AM1
IntAct (EBI)Q49AM1
FunCoupENSG00000120832
BioGRIDMTERF2
STRING (EMBL)MTERF2
ZODIACMTERF2
Ontologies - Pathways
QuickGOQ49AM1
Ontology : AmiGOnucleic acid binding  double-stranded DNA binding  mitochondrial matrix  mitochondrial matrix  transcription, DNA-templated  regulation of transcription, DNA-templated  termination of mitochondrial transcription  mitochondrial nucleoid  protein homodimerization activity  transcription regulatory region DNA binding  
Ontology : EGO-EBInucleic acid binding  double-stranded DNA binding  mitochondrial matrix  mitochondrial matrix  transcription, DNA-templated  regulation of transcription, DNA-templated  termination of mitochondrial transcription  mitochondrial nucleoid  protein homodimerization activity  transcription regulatory region DNA binding  
NDEx NetworkMTERF2
Atlas of Cancer Signalling NetworkMTERF2
Wikipedia pathwaysMTERF2
Orthology - Evolution
OrthoDB80298
GeneTree (enSembl)ENSG00000120832
Phylogenetic Trees/Animal Genes : TreeFamMTERF2
HOVERGENQ49AM1
HOGENOMQ49AM1
Homologs : HomoloGeneMTERF2
Homology/Alignments : Family Browser (UCSC)MTERF2
Gene fusions - Rearrangements
Tumor Fusion PortalMTERF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTERF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTERF2
dbVarMTERF2
ClinVarMTERF2
1000_GenomesMTERF2 
Exome Variant ServerMTERF2
ExAC (Exome Aggregation Consortium)ENSG00000120832
GNOMAD BrowserENSG00000120832
Genetic variants : HAPMAP80298
Genomic Variants (DGV)MTERF2 [DGVbeta]
DECIPHERMTERF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMTERF2 
Mutations
ICGC Data PortalMTERF2 
TCGA Data PortalMTERF2 
Broad Tumor PortalMTERF2
OASIS PortalMTERF2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMTERF2
BioMutasearch MTERF2
DgiDB (Drug Gene Interaction Database)MTERF2
DoCM (Curated mutations)MTERF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTERF2 (select a term)
intoGenMTERF2
Cancer3DMTERF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616929   
Orphanet
DisGeNETMTERF2
MedgenMTERF2
Genetic Testing Registry MTERF2
NextProtQ49AM1 [Medical]
TSGene80298
GENETestsMTERF2
Target ValidationMTERF2
Huge Navigator MTERF2 [HugePedia]
snp3D : Map Gene to Disease80298
BioCentury BCIQMTERF2
ClinGenMTERF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80298
Chemical/Pharm GKB GenePA142671311
Clinical trialMTERF2
Miscellaneous
canSAR (ICR)MTERF2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTERF2
EVEXMTERF2
GoPubMedMTERF2
iHOPMTERF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:27:00 CET 2017

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