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MTERF3 (mitochondrial transcription termination factor 3)

Identity

Alias_namesMTERFD1
MTERF domain containing 1
Alias_symbol (synonym)CGI-12
FLJ10939
Other alias
HGNC (Hugo) MTERF3
LocusID (NCBI) 51001
Atlas_Id 70538
Location 8q22.1  [Link to chromosome band 8q22]
Location_base_pair Starts at 96239398 and ends at 96261613 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MITF (3p13) / MTERF3 (8q22.1)MTERF3 (8q22.1) / CCDC178 (18q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTERF3   24258
Cards
Entrez_Gene (NCBI)MTERF3  51001  mitochondrial transcription termination factor 3
AliasesCGI-12; MTERFD1
GeneCards (Weizmann)MTERF3
Ensembl hg19 (Hinxton)ENSG00000156469 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156469 [Gene_View]  chr8:96239398-96261613 [Contig_View]  MTERF3 [Vega]
ICGC DataPortalENSG00000156469
TCGA cBioPortalMTERF3
AceView (NCBI)MTERF3
Genatlas (Paris)MTERF3
WikiGenes51001
SOURCE (Princeton)MTERF3
Genetics Home Reference (NIH)MTERF3
Genomic and cartography
GoldenPath hg38 (UCSC)MTERF3  -     chr8:96239398-96261613 -  8q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MTERF3  -     8q22.1   [Description]    (hg19-Feb_2009)
EnsemblMTERF3 - 8q22.1 [CytoView hg19]  MTERF3 - 8q22.1 [CytoView hg38]
Mapping of homologs : NCBIMTERF3 [Mapview hg19]  MTERF3 [Mapview hg38]
OMIM616930   
Gene and transcription
Genbank (Entrez)AF132946 AK001801 AK309002 BC012995 HQ448290
RefSeq transcript (Entrez)NM_001286643 NM_015942
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MTERF3
Cluster EST : UnigeneHs.308613 [ NCBI ]
CGAP (NCI)Hs.308613
Alternative Splicing GalleryENSG00000156469
Gene ExpressionMTERF3 [ NCBI-GEO ]   MTERF3 [ EBI - ARRAY_EXPRESS ]   MTERF3 [ SEEK ]   MTERF3 [ MEM ]
Gene Expression Viewer (FireBrowse)MTERF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51001
GTEX Portal (Tissue expression)MTERF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96E29   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96E29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96E29
Splice isoforms : SwissVarQ96E29
PhosPhoSitePlusQ96E29
Domains : Interpro (EBI)MTERF   
Domain families : Pfam (Sanger)mTERF (PF02536)   
Domain families : Pfam (NCBI)pfam02536   
Domain families : Smart (EMBL)Mterf (SM00733)  
Conserved Domain (NCBI)MTERF3
DMDM Disease mutations51001
Blocks (Seattle)MTERF3
PDB (SRS)3M66   
PDB (PDBSum)3M66   
PDB (IMB)3M66   
PDB (RSDB)3M66   
Structural Biology KnowledgeBase3M66   
SCOP (Structural Classification of Proteins)3M66   
CATH (Classification of proteins structures)3M66   
SuperfamilyQ96E29
Human Protein AtlasENSG00000156469
Peptide AtlasQ96E29
HPRD10823
IPIIPI00101163   IPI00798150   IPI00975636   IPI00974573   IPI00985111   
Protein Interaction databases
DIP (DOE-UCLA)Q96E29
IntAct (EBI)Q96E29
FunCoupENSG00000156469
BioGRIDMTERF3
STRING (EMBL)MTERF3
ZODIACMTERF3
Ontologies - Pathways
QuickGOQ96E29
Ontology : AmiGOdouble-stranded DNA binding  single-stranded RNA binding  protein binding  nucleoplasm  mitochondrion  mitochondrial outer membrane  transcription, DNA-templated  RNA splicing  macroautophagy  rRNA binding  developmental process  ribosome assembly  transcription regulatory region DNA binding  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIdouble-stranded DNA binding  single-stranded RNA binding  protein binding  nucleoplasm  mitochondrion  mitochondrial outer membrane  transcription, DNA-templated  RNA splicing  macroautophagy  rRNA binding  developmental process  ribosome assembly  transcription regulatory region DNA binding  negative regulation of transcription, DNA-templated  
NDEx NetworkMTERF3
Atlas of Cancer Signalling NetworkMTERF3
Wikipedia pathwaysMTERF3
Orthology - Evolution
OrthoDB51001
GeneTree (enSembl)ENSG00000156469
Phylogenetic Trees/Animal Genes : TreeFamMTERF3
HOVERGENQ96E29
HOGENOMQ96E29
Homologs : HomoloGeneMTERF3
Homology/Alignments : Family Browser (UCSC)MTERF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTERF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTERF3
dbVarMTERF3
ClinVarMTERF3
1000_GenomesMTERF3 
Exome Variant ServerMTERF3
ExAC (Exome Aggregation Consortium)MTERF3 (select the gene name)
Genetic variants : HAPMAP51001
Genomic Variants (DGV)MTERF3 [DGVbeta]
DECIPHERMTERF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMTERF3 
Mutations
ICGC Data PortalMTERF3 
TCGA Data PortalMTERF3 
Broad Tumor PortalMTERF3
OASIS PortalMTERF3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMTERF3
BioMutasearch MTERF3
DgiDB (Drug Gene Interaction Database)MTERF3
DoCM (Curated mutations)MTERF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTERF3 (select a term)
intoGenMTERF3
Cancer3DMTERF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616930   
Orphanet
MedgenMTERF3
Genetic Testing Registry MTERF3
NextProtQ96E29 [Medical]
TSGene51001
GENETestsMTERF3
Target ValidationMTERF3
Huge Navigator MTERF3 [HugePedia]
snp3D : Map Gene to Disease51001
BioCentury BCIQMTERF3
ClinGenMTERF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51001
Chemical/Pharm GKB GenePA142671309
Clinical trialMTERF3
Miscellaneous
canSAR (ICR)MTERF3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTERF3
EVEXMTERF3
GoPubMedMTERF3
iHOPMTERF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:48 CEST 2017

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