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MTFMT (mitochondrial methionyl-tRNA formyltransferase)

Identity

Alias_symbol (synonym)FMT1
Other aliasCOXPD15
HGNC (Hugo) MTFMT
LocusID (NCBI) 123263
Atlas_Id 70540
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65001512 and ends at 65029639 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTFMT   29666
Cards
Entrez_Gene (NCBI)MTFMT  123263  mitochondrial methionyl-tRNA formyltransferase
AliasesCOXPD15; FMT1
GeneCards (Weizmann)MTFMT
Ensembl hg19 (Hinxton)ENSG00000103707 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103707 [Gene_View]  chr15:65001512-65029639 [Contig_View]  MTFMT [Vega]
ICGC DataPortalENSG00000103707
TCGA cBioPortalMTFMT
AceView (NCBI)MTFMT
Genatlas (Paris)MTFMT
WikiGenes123263
SOURCE (Princeton)MTFMT
Genetics Home Reference (NIH)MTFMT
Genomic and cartography
GoldenPath hg38 (UCSC)MTFMT  -     chr15:65001512-65029639 -  15q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MTFMT  -     15q22.31   [Description]    (hg19-Feb_2009)
EnsemblMTFMT - 15q22.31 [CytoView hg19]  MTFMT - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBIMTFMT [Mapview hg19]  MTFMT [Mapview hg38]
OMIM611766   614947   
Gene and transcription
Genbank (Entrez)AK055688 AK301390 BC016630 BC033687 BQ774051
RefSeq transcript (Entrez)NM_139242
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MTFMT
Cluster EST : UnigeneHs.531615 [ NCBI ]
CGAP (NCI)Hs.531615
Alternative Splicing GalleryENSG00000103707
Gene ExpressionMTFMT [ NCBI-GEO ]   MTFMT [ EBI - ARRAY_EXPRESS ]   MTFMT [ SEEK ]   MTFMT [ MEM ]
Gene Expression Viewer (FireBrowse)MTFMT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123263
GTEX Portal (Tissue expression)MTFMT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DP5
Splice isoforms : SwissVarQ96DP5
Catalytic activity : Enzyme2.1.2.9 [ Enzyme-Expasy ]   2.1.2.92.1.2.9 [ IntEnz-EBI ]   2.1.2.9 [ BRENDA ]   2.1.2.9 [ KEGG ]   
PhosPhoSitePlusQ96DP5
Domains : Interpro (EBI)Fmt    Formyl_trans_C    Formyl_transf_N    Formyl_transferase_C-like   
Domain families : Pfam (Sanger)Formyl_trans_C (PF02911)    Formyl_trans_N (PF00551)   
Domain families : Pfam (NCBI)pfam02911    pfam00551   
Conserved Domain (NCBI)MTFMT
DMDM Disease mutations123263
Blocks (Seattle)MTFMT
SuperfamilyQ96DP5
Human Protein AtlasENSG00000103707
Peptide AtlasQ96DP5
HPRD14799
IPIIPI00055753   IPI00797492   
Protein Interaction databases
DIP (DOE-UCLA)Q96DP5
IntAct (EBI)Q96DP5
FunCoupENSG00000103707
BioGRIDMTFMT
STRING (EMBL)MTFMT
ZODIACMTFMT
Ontologies - Pathways
QuickGOQ96DP5
Ontology : AmiGOmethionyl-tRNA formyltransferase activity  mitochondrion  translational initiation  conversion of methionyl-tRNA to N-formyl-methionyl-tRNA  
Ontology : EGO-EBImethionyl-tRNA formyltransferase activity  mitochondrion  translational initiation  conversion of methionyl-tRNA to N-formyl-methionyl-tRNA  
Pathways : KEGGOne carbon pool by folate    Aminoacyl-tRNA biosynthesis   
NDEx NetworkMTFMT
Atlas of Cancer Signalling NetworkMTFMT
Wikipedia pathwaysMTFMT
Orthology - Evolution
OrthoDB123263
GeneTree (enSembl)ENSG00000103707
Phylogenetic Trees/Animal Genes : TreeFamMTFMT
HOVERGENQ96DP5
HOGENOMQ96DP5
Homologs : HomoloGeneMTFMT
Homology/Alignments : Family Browser (UCSC)MTFMT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTFMT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTFMT
dbVarMTFMT
ClinVarMTFMT
1000_GenomesMTFMT 
Exome Variant ServerMTFMT
ExAC (Exome Aggregation Consortium)MTFMT (select the gene name)
Genetic variants : HAPMAP123263
Genomic Variants (DGV)MTFMT [DGVbeta]
DECIPHERMTFMT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMTFMT 
Mutations
ICGC Data PortalMTFMT 
TCGA Data PortalMTFMT 
Broad Tumor PortalMTFMT
OASIS PortalMTFMT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTFMT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTFMT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MTFMT
DgiDB (Drug Gene Interaction Database)MTFMT
DoCM (Curated mutations)MTFMT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTFMT (select a term)
intoGenMTFMT
Cancer3DMTFMT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611766    614947   
Orphanet19814    21667   
MedgenMTFMT
Genetic Testing Registry MTFMT
NextProtQ96DP5 [Medical]
TSGene123263
GENETestsMTFMT
Target ValidationMTFMT
Huge Navigator MTFMT [HugePedia]
snp3D : Map Gene to Disease123263
BioCentury BCIQMTFMT
ClinGenMTFMT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123263
Chemical/Pharm GKB GenePA142671304
Clinical trialMTFMT
Miscellaneous
canSAR (ICR)MTFMT (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTFMT
EVEXMTFMT
GoPubMedMTFMT
iHOPMTFMT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:25 CEST 2017

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