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MTFR1 (mitochondrial fission regulator 1)

Identity

Alias_symbol (synonym)CHPPR
KIAA0009
FAM54A2
Other alias
HGNC (Hugo) MTFR1
LocusID (NCBI) 9650
Atlas_Id 70542
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 65669873 and ends at 65710563 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HOOK3 (8p11.21) / MTFR1 (8q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTFR1   29510
Cards
Entrez_Gene (NCBI)MTFR1  9650  mitochondrial fission regulator 1
AliasesCHPPR; FAM54A2
GeneCards (Weizmann)MTFR1
Ensembl hg19 (Hinxton)ENSG00000066855 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000066855 [Gene_View]  chr8:65669873-65710563 [Contig_View]  MTFR1 [Vega]
ICGC DataPortalENSG00000066855
TCGA cBioPortalMTFR1
AceView (NCBI)MTFR1
Genatlas (Paris)MTFR1
WikiGenes9650
SOURCE (Princeton)MTFR1
Genetics Home Reference (NIH)MTFR1
Genomic and cartography
GoldenPath hg38 (UCSC)MTFR1  -     chr8:65669873-65710563 +  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MTFR1  -     8q13.1   [Description]    (hg19-Feb_2009)
EnsemblMTFR1 - 8q13.1 [CytoView hg19]  MTFR1 - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBIMTFR1 [Mapview hg19]  MTFR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA015794 AK298945 AK304716 AK316202 AW157714
RefSeq transcript (Entrez)NM_001145838 NM_001145839 NM_014637
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MTFR1
Cluster EST : UnigeneHs.584788 [ NCBI ]
CGAP (NCI)Hs.584788
Alternative Splicing GalleryENSG00000066855
Gene ExpressionMTFR1 [ NCBI-GEO ]   MTFR1 [ EBI - ARRAY_EXPRESS ]   MTFR1 [ SEEK ]   MTFR1 [ MEM ]
Gene Expression Viewer (FireBrowse)MTFR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9650
GTEX Portal (Tissue expression)MTFR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15390   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15390  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15390
Splice isoforms : SwissVarQ15390
PhosPhoSitePlusQ15390
Domains : Interpro (EBI)Mtfr1   
Domain families : Pfam (Sanger)Mito_fiss_reg (PF05308)   
Domain families : Pfam (NCBI)pfam05308   
Conserved Domain (NCBI)MTFR1
DMDM Disease mutations9650
Blocks (Seattle)MTFR1
SuperfamilyQ15390
Human Protein AtlasENSG00000066855
Peptide AtlasQ15390
HPRD12389
IPIIPI00016699   IPI00926994   IPI00910782   IPI00976377   IPI00979201   IPI00973842   IPI01010619   
Protein Interaction databases
DIP (DOE-UCLA)Q15390
IntAct (EBI)Q15390
FunCoupENSG00000066855
BioGRIDMTFR1
STRING (EMBL)MTFR1
ZODIACMTFR1
Ontologies - Pathways
QuickGOQ15390
Ontology : AmiGOmitochondrial fission  mitochondrial fission  mitochondrion  mitochondrion  mitochondrion  cytosol  plasma membrane  mitochondrion organization  aerobic respiration  aerobic respiration  
Ontology : EGO-EBImitochondrial fission  mitochondrial fission  mitochondrion  mitochondrion  mitochondrion  cytosol  plasma membrane  mitochondrion organization  aerobic respiration  aerobic respiration  
NDEx NetworkMTFR1
Atlas of Cancer Signalling NetworkMTFR1
Wikipedia pathwaysMTFR1
Orthology - Evolution
OrthoDB9650
GeneTree (enSembl)ENSG00000066855
Phylogenetic Trees/Animal Genes : TreeFamMTFR1
HOVERGENQ15390
HOGENOMQ15390
Homologs : HomoloGeneMTFR1
Homology/Alignments : Family Browser (UCSC)MTFR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTFR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTFR1
dbVarMTFR1
ClinVarMTFR1
1000_GenomesMTFR1 
Exome Variant ServerMTFR1
ExAC (Exome Aggregation Consortium)MTFR1 (select the gene name)
Genetic variants : HAPMAP9650
Genomic Variants (DGV)MTFR1 [DGVbeta]
DECIPHERMTFR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMTFR1 
Mutations
ICGC Data PortalMTFR1 
TCGA Data PortalMTFR1 
Broad Tumor PortalMTFR1
OASIS PortalMTFR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTFR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTFR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MTFR1
DgiDB (Drug Gene Interaction Database)MTFR1
DoCM (Curated mutations)MTFR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTFR1 (select a term)
intoGenMTFR1
Cancer3DMTFR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMTFR1
Genetic Testing Registry MTFR1
NextProtQ15390 [Medical]
TSGene9650
GENETestsMTFR1
Target ValidationMTFR1
Huge Navigator MTFR1 [HugePedia]
snp3D : Map Gene to Disease9650
BioCentury BCIQMTFR1
ClinGenMTFR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9650
Chemical/Pharm GKB GenePA142671305
Clinical trialMTFR1
Miscellaneous
canSAR (ICR)MTFR1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTFR1
EVEXMTFR1
GoPubMedMTFR1
iHOPMTFR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:25 CEST 2017

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