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MTHFSD (methenyltetrahydrofolate synthetase domain containing)

Identity

Alias_symbol (synonym)FLJ12998
Other alias-
HGNC (Hugo) MTHFSD
LocusID (NCBI) 64779
Atlas_Id 70551
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 86530176 and ends at 86555235 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTHFSD   25778
Cards
Entrez_Gene (NCBI)MTHFSD  64779  methenyltetrahydrofolate synthetase domain containing
Aliases
GeneCards (Weizmann)MTHFSD
Ensembl hg19 (Hinxton)ENSG00000103248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103248 [Gene_View]  chr16:86530176-86555235 [Contig_View]  MTHFSD [Vega]
ICGC DataPortalENSG00000103248
TCGA cBioPortalMTHFSD
AceView (NCBI)MTHFSD
Genatlas (Paris)MTHFSD
WikiGenes64779
SOURCE (Princeton)MTHFSD
Genetics Home Reference (NIH)MTHFSD
Genomic and cartography
GoldenPath hg38 (UCSC)MTHFSD  -     chr16:86530176-86555235 -  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MTHFSD  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblMTHFSD - 16q24.1 [CytoView hg19]  MTHFSD - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBIMTHFSD [Mapview hg19]  MTHFSD [Mapview hg38]
OMIM616820   
Gene and transcription
Genbank (Entrez)AI263847 AK023060 AK023955 AK096836 AK125015
RefSeq transcript (Entrez)NM_001159377 NM_001159378 NM_001159379 NM_001159380 NM_022764
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MTHFSD
Cluster EST : UnigeneHs.343627 [ NCBI ]
CGAP (NCI)Hs.343627
Alternative Splicing GalleryENSG00000103248
Gene ExpressionMTHFSD [ NCBI-GEO ]   MTHFSD [ EBI - ARRAY_EXPRESS ]   MTHFSD [ SEEK ]   MTHFSD [ MEM ]
Gene Expression Viewer (FireBrowse)MTHFSD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64779
GTEX Portal (Tissue expression)MTHFSD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M296   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M296  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M296
Splice isoforms : SwissVarQ2M296
PhosPhoSitePlusQ2M296
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)FTHF_cligase    FTHF_cligase-like    MTHFSD_RRM    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)5-FTHF_cyc-lig (PF01812)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam01812    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)MTHFSD
DMDM Disease mutations64779
Blocks (Seattle)MTHFSD
PDB (SRS)2E5J   
PDB (PDBSum)2E5J   
PDB (IMB)2E5J   
PDB (RSDB)2E5J   
Structural Biology KnowledgeBase2E5J   
SCOP (Structural Classification of Proteins)2E5J   
CATH (Classification of proteins structures)2E5J   
SuperfamilyQ2M296
Human Protein AtlasENSG00000103248
Peptide AtlasQ2M296
HPRD07808
IPIIPI00480140   IPI00303530   IPI01013949   IPI00640519   IPI00929111   IPI00929575   
Protein Interaction databases
DIP (DOE-UCLA)Q2M296
IntAct (EBI)Q2M296
FunCoupENSG00000103248
BioGRIDMTHFSD
STRING (EMBL)MTHFSD
ZODIACMTHFSD
Ontologies - Pathways
QuickGOQ2M296
Ontology : AmiGORNA binding  cytoplasm  intracellular mRNA localization  
Ontology : EGO-EBIRNA binding  cytoplasm  intracellular mRNA localization  
NDEx NetworkMTHFSD
Atlas of Cancer Signalling NetworkMTHFSD
Wikipedia pathwaysMTHFSD
Orthology - Evolution
OrthoDB64779
GeneTree (enSembl)ENSG00000103248
Phylogenetic Trees/Animal Genes : TreeFamMTHFSD
HOVERGENQ2M296
HOGENOMQ2M296
Homologs : HomoloGeneMTHFSD
Homology/Alignments : Family Browser (UCSC)MTHFSD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTHFSD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTHFSD
dbVarMTHFSD
ClinVarMTHFSD
1000_GenomesMTHFSD 
Exome Variant ServerMTHFSD
ExAC (Exome Aggregation Consortium)MTHFSD (select the gene name)
Genetic variants : HAPMAP64779
Genomic Variants (DGV)MTHFSD [DGVbeta]
DECIPHERMTHFSD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMTHFSD 
Mutations
ICGC Data PortalMTHFSD 
TCGA Data PortalMTHFSD 
Broad Tumor PortalMTHFSD
OASIS PortalMTHFSD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTHFSD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTHFSD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTHFSD
DgiDB (Drug Gene Interaction Database)MTHFSD
DoCM (Curated mutations)MTHFSD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTHFSD (select a term)
intoGenMTHFSD
Cancer3DMTHFSD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616820   
Orphanet
MedgenMTHFSD
Genetic Testing Registry MTHFSD
NextProtQ2M296 [Medical]
TSGene64779
GENETestsMTHFSD
Huge Navigator MTHFSD [HugePedia]
snp3D : Map Gene to Disease64779
BioCentury BCIQMTHFSD
ClinGenMTHFSD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64779
Chemical/Pharm GKB GenePA144596408
Clinical trialMTHFSD
Miscellaneous
canSAR (ICR)MTHFSD (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTHFSD
EVEXMTHFSD
GoPubMedMTHFSD
iHOPMTHFSD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:44:08 CEST 2017

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