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MTIF3 (mitochondrial translational initiation factor 3)

Identity

Alias_symbol (synonym)IF-3mt
IF3(mt)
Other aliasIF3mt
HGNC (Hugo) MTIF3
LocusID (NCBI) 219402
Atlas_Id 70552
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 28009776 and ends at 28024334 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MTIF3 (13q12.2) / SSBP1 (7q34)UBL3 (13q12.3) / MTIF3 (13q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTIF3   29788
Cards
Entrez_Gene (NCBI)MTIF3  219402  mitochondrial translational initiation factor 3
AliasesIF3mt
GeneCards (Weizmann)MTIF3
Ensembl hg19 (Hinxton)ENSG00000122033 [Gene_View]  chr13:28009776-28024334 [Contig_View]  MTIF3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000122033 [Gene_View]  chr13:28009776-28024334 [Contig_View]  MTIF3 [Vega]
ICGC DataPortalENSG00000122033
TCGA cBioPortalMTIF3
AceView (NCBI)MTIF3
Genatlas (Paris)MTIF3
WikiGenes219402
SOURCE (Princeton)MTIF3
Genetics Home Reference (NIH)MTIF3
Genomic and cartography
GoldenPath hg19 (UCSC)MTIF3  -     chr13:28009776-28024334 -  13q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MTIF3  -     13q12.2   [Description]    (hg38-Dec_2013)
EnsemblMTIF3 - 13q12.2 [CytoView hg19]  MTIF3 - 13q12.2 [CytoView hg38]
Mapping of homologs : NCBIMTIF3 [Mapview hg19]  MTIF3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF410851 AK090995 AK094420 BC039599 BC046166
RefSeq transcript (Entrez)NM_001166261 NM_001166262 NM_001166263 NM_152912
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)MTIF3
Cluster EST : UnigeneHs.534582 [ NCBI ]
CGAP (NCI)Hs.534582
Alternative Splicing GalleryENSG00000122033
Gene ExpressionMTIF3 [ NCBI-GEO ]   MTIF3 [ EBI - ARRAY_EXPRESS ]   MTIF3 [ SEEK ]   MTIF3 [ MEM ]
Gene Expression Viewer (FireBrowse)MTIF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219402
GTEX Portal (Tissue expression)MTIF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2K0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2K0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2K0
Splice isoforms : SwissVarQ9H2K0
PhosPhoSitePlusQ9H2K0
Domains : Interpro (EBI)Translation_initiation_fac_3    Translation_initiation_fac_3_C    Translation_initiation_fac_3_N   
Domain families : Pfam (Sanger)IF3_C (PF00707)    IF3_N (PF05198)   
Domain families : Pfam (NCBI)pfam00707    pfam05198   
Conserved Domain (NCBI)MTIF3
DMDM Disease mutations219402
Blocks (Seattle)MTIF3
SuperfamilyQ9H2K0
Human Protein AtlasENSG00000122033
Peptide AtlasQ9H2K0
HPRD17609
IPIIPI00552756   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2K0
IntAct (EBI)Q9H2K0
FunCoupENSG00000122033
BioGRIDMTIF3
STRING (EMBL)MTIF3
ZODIACMTIF3
Ontologies - Pathways
QuickGOQ9H2K0
Ontology : AmiGOtranslation initiation factor activity  protein binding  mitochondrion  organelle organization  translation factor activity, RNA binding  mitochondrial translation  ribosome disassembly  ribosomal small subunit binding  mitochondrial translational initiation  mitochondrial translational initiation  
Ontology : EGO-EBItranslation initiation factor activity  protein binding  mitochondrion  organelle organization  translation factor activity, RNA binding  mitochondrial translation  ribosome disassembly  ribosomal small subunit binding  mitochondrial translational initiation  mitochondrial translational initiation  
NDEx NetworkMTIF3
Atlas of Cancer Signalling NetworkMTIF3
Wikipedia pathwaysMTIF3
Orthology - Evolution
OrthoDB219402
GeneTree (enSembl)ENSG00000122033
Phylogenetic Trees/Animal Genes : TreeFamMTIF3
HOVERGENQ9H2K0
HOGENOMQ9H2K0
Homologs : HomoloGeneMTIF3
Homology/Alignments : Family Browser (UCSC)MTIF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTIF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTIF3
dbVarMTIF3
ClinVarMTIF3
1000_GenomesMTIF3 
Exome Variant ServerMTIF3
ExAC (Exome Aggregation Consortium)MTIF3 (select the gene name)
Genetic variants : HAPMAP219402
Genomic Variants (DGV)MTIF3 [DGVbeta]
DECIPHER (Syndromes)13:28009776-28024334  ENSG00000122033
CONAN: Copy Number AnalysisMTIF3 
Mutations
ICGC Data PortalMTIF3 
TCGA Data PortalMTIF3 
Broad Tumor PortalMTIF3
OASIS PortalMTIF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTIF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTIF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MTIF3
DgiDB (Drug Gene Interaction Database)MTIF3
DoCM (Curated mutations)MTIF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTIF3 (select a term)
intoGenMTIF3
Cancer3DMTIF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMTIF3
Genetic Testing Registry MTIF3
NextProtQ9H2K0 [Medical]
TSGene219402
GENETestsMTIF3
Huge Navigator MTIF3 [HugePedia]
snp3D : Map Gene to Disease219402
BioCentury BCIQMTIF3
ClinGenMTIF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219402
Chemical/Pharm GKB GenePA162396264
Clinical trialMTIF3
Miscellaneous
canSAR (ICR)MTIF3 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTIF3
EVEXMTIF3
GoPubMedMTIF3
iHOPMTIF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:04 CET 2017

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