Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MTM1 (myotubularin 1)

Identity

Other namesCNM
MTMX
XLMTM
HGNC (Hugo) MTM1
LocusID (NCBI) 4534
Location Xq28
Location_base_pair Starts at 149737047 and ends at 149841616 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MTM1   7448
Entrez_Gene (NCBI)MTM1  4534  myotubularin 1
Cards
GeneCards (Weizmann)MTM1
Ensembl (Hinxton)ENSG00000171100 [Gene_View]  chrX:149737047-149841616 [Contig_View]  MTM1 [Vega]
AceView (NCBI)MTM1
Genatlas (Paris)MTM1
SOURCE (Stanford)NM_000252
Genomic and cartography
GoldenPath (UCSC)MTM1  -  Xq28   chrX:149737047-149841616 +  Xq28   [Description]    (hg19-Feb_2009)
EnsemblMTM1 - Xq28 [CytoView]
Mapping of homologs : NCBIMTM1 [Mapview]
OMIM300415   310400   
Gene and transcription
Genbank (Entrez)AK291710 AK297021 AK297057 AK304036 AL832715
RefSeq transcript (SRS)NM_000252
RefSeq transcript (Entrez)NM_000252
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NG_008199 NT_167198 NW_001842414 NW_004070890 NW_004078126
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_008199 NT_167198 NW_001842414 NW_004070890 NW_004078126
Consensus coding sequences : CCDS (NCBI)MTM1
Cluster EST : UnigeneHs.655056 [ SRS ] Hs.655056 [ NCBI ]
CGAP (NCI)Hs.655056
Alternative Splicing : Fast-db (Paris)GSHG0031876
Alternative Splicing GalleryENSG00000171100
Gene ExpressionMTM1 [ NCBI-GEO ]   MTM1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13496 (SRS) Q13496 (Uniprot)
NextProtQ13496
With graphics : InterProQ13496
Splice isoforms : SwissVarQ13496(Swissvar)
Domaine pattern : Prosite (SRS)PPASE_MYOTUBULARIN (PS51339)    TYR_PHOSPHATASE_1 (PS00383)    TYR_PHOSPHATASE_2 (PS50056)   
Domaine pattern : Prosite (Expaxy)PPASE_MYOTUBULARIN (PS51339)    TYR_PHOSPHATASE_1 (PS00383)    TYR_PHOSPHATASE_2 (PS50056)   
Domains : Interpro (SRS)GRAM    Myotub-related    Myotubularin_phosphatase_dom    PH_like_dom    Tyr/Dual-sp_Pase    Tyr_Pase_AS   
Domains : Interpro (EBI)GRAM    Myotub-related    Myotubularin_phosphatase_dom    PH_like_dom    Tyr/Dual-sp_Pase    Tyr_Pase_AS   
Related proteins : CluSTrQ13496
Domain families : Pfam (SRS)GRAM (PF02893)    Myotub-related (PF06602)   
Domain families : Pfam (Sanger)GRAM (PF02893)    Myotub-related (PF06602)   
Domain families : Pfam (NCBI)pfam02893    pfam06602   
Domain families : Smart (EMBL)GRAM (SM00568)  
DMDM4534
Blocks (Seattle)Q13496
Human Protein AtlasENSG00000171100
HPRD02331
IPIIPI00748788   IPI00645663   IPI01015875   IPI01015541   IPI00639863   
Protein Interaction databases
DIP (DOE-UCLA)Q13496
IntAct (EBI)Q13496
FunCoupENSG00000171100
REACTOMEMTM1
Protein Interaction Database4534
BioGRIDMTM1
InParanoidQ13496
Interologous Interaction database Q13496
IntegromeDBMTM1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MTM1
SNP (GeneSNP Utah)MTM1
SNP : HGBaseMTM1
Genetic variants : HAPMAPMTM1
Somatic Mutations in Cancer : COSMICMTM1 
CONAN: Copy Number AnalysisMTM1 
Mutations and Diseases : HGMDMTM1
OMIM300415    310400   
GENETests300415    310400   
Disease Genetic AssociationMTM1
Huge Navigator MTM1 [HugePedia]  MTM1 [HugeCancerGEM]
Genomic VariantsMTM1  MTM1 [DGVbeta]
ClinVarMTM1
snp3D : Map Gene to Disease4534
General knowledge
Homologs : HomoloGeneMTM1
Homology/Alignments : Family Browser (UCSC)MTM1
Phylogenetic Trees/Animal Genes : TreeFamMTM1
Chemical/Protein Interactions : CTD4534
Chemical/Pharm GKB GenePA31251
Clinical trialMTM1
Cancer Resource (Charite)ENSG00000171100
Ontology : AmiGOruffle  phosphatidylinositol-3-phosphatase activity  phosphoprotein phosphatase activity  protein tyrosine phosphatase activity  cytoplasm  late endosome  cytosol  plasma membrane  protein dephosphorylation  phospholipid metabolic process  phosphatidylinositol biosynthetic process  endosome to lysosome transport  protein transport  intermediate filament binding  filopodium  I band  phosphatidylinositol binding  regulation of vacuole organization  small molecule metabolic process  intermediate filament organization  muscle cell homeostasis  phosphatidylinositol dephosphorylation  mitochondrion distribution  phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity  mitochondrion morphogenesis  
Ontology : EGO-EBIruffle  phosphatidylinositol-3-phosphatase activity  phosphoprotein phosphatase activity  protein tyrosine phosphatase activity  cytoplasm  late endosome  cytosol  plasma membrane  protein dephosphorylation  phospholipid metabolic process  phosphatidylinositol biosynthetic process  endosome to lysosome transport  protein transport  intermediate filament binding  filopodium  I band  phosphatidylinositol binding  regulation of vacuole organization  small molecule metabolic process  intermediate filament organization  muscle cell homeostasis  phosphatidylinositol dephosphorylation  mitochondrion distribution  phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity  mitochondrion morphogenesis  
Other databases
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
PubGeneMTM1
iHOPMTM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:59:23 CEST 2013
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