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MTMR10 (myotubularin related protein 10)

Identity

Alias_symbol (synonym)FLJ20313
Other alias-
HGNC (Hugo) MTMR10
LocusID (NCBI) 54893
Atlas_Id 70556
Location 15q13.3  [Link to chromosome band 15q13]
Location_base_pair Starts at 30938941 and ends at 30991604 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MTMR10 (15q13.3) / TSPAN14 (10q23.1)RPLP0 (12q24.23) / MTMR10 (15q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTMR10   25999
Cards
Entrez_Gene (NCBI)MTMR10  54893  myotubularin related protein 10
Aliases
GeneCards (Weizmann)MTMR10
Ensembl hg19 (Hinxton)ENSG00000166912 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166912 [Gene_View]  chr15:30938941-30991604 [Contig_View]  MTMR10 [Vega]
ICGC DataPortalENSG00000166912
TCGA cBioPortalMTMR10
AceView (NCBI)MTMR10
Genatlas (Paris)MTMR10
WikiGenes54893
SOURCE (Princeton)MTMR10
Genetics Home Reference (NIH)MTMR10
Genomic and cartography
GoldenPath hg38 (UCSC)MTMR10  -     chr15:30938941-30991604 -  15q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MTMR10  -     15q13.3   [Description]    (hg19-Feb_2009)
EnsemblMTMR10 - 15q13.3 [CytoView hg19]  MTMR10 - 15q13.3 [CytoView hg38]
Mapping of homologs : NCBIMTMR10 [Mapview hg19]  MTMR10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA461184 AK000320 AK296926 AK303672 AL598227
RefSeq transcript (Entrez)NM_017762
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_187660 NW_011332701
Consensus coding sequences : CCDS (NCBI)MTMR10
Cluster EST : UnigeneHs.30141 [ NCBI ]
CGAP (NCI)Hs.30141
Alternative Splicing GalleryENSG00000166912
Gene ExpressionMTMR10 [ NCBI-GEO ]   MTMR10 [ EBI - ARRAY_EXPRESS ]   MTMR10 [ SEEK ]   MTMR10 [ MEM ]
Gene Expression Viewer (FireBrowse)MTMR10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54893
GTEX Portal (Tissue expression)MTMR10
Human Protein AtlasENSG00000166912-MTMR10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXD2
Splice isoforms : SwissVarQ9NXD2
PhosPhoSitePlusQ9NXD2
Domaine pattern : Prosite (Expaxy)PPASE_MYOTUBULARIN (PS51339)   
Domains : Interpro (EBI)MTMR10    MTMR12-like_C    Myotubularin-like_Pase_dom    Myotubularin_fam    PH_dom-like    Prot-tyrosine_phosphatase-like   
Domain families : Pfam (Sanger)3-PAP (PF12578)    Myotub-related (PF06602)   
Domain families : Pfam (NCBI)pfam12578    pfam06602   
Conserved Domain (NCBI)MTMR10
DMDM Disease mutations54893
Blocks (Seattle)MTMR10
SuperfamilyQ9NXD2
Human Protein Atlas [tissue]ENSG00000166912-MTMR10 [tissue]
Peptide AtlasQ9NXD2
HPRD07895
IPIIPI00719173   IPI00844565   IPI00844170   IPI00941727   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXD2
IntAct (EBI)Q9NXD2
FunCoupENSG00000166912
BioGRIDMTMR10
STRING (EMBL)MTMR10
ZODIACMTMR10
Ontologies - Pathways
QuickGOQ9NXD2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMTMR10
Atlas of Cancer Signalling NetworkMTMR10
Wikipedia pathwaysMTMR10
Orthology - Evolution
OrthoDB54893
GeneTree (enSembl)ENSG00000166912
Phylogenetic Trees/Animal Genes : TreeFamMTMR10
HOVERGENQ9NXD2
HOGENOMQ9NXD2
Homologs : HomoloGeneMTMR10
Homology/Alignments : Family Browser (UCSC)MTMR10
Gene fusions - Rearrangements
Fusion: Tumor Portal MTMR10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTMR10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTMR10
dbVarMTMR10
ClinVarMTMR10
1000_GenomesMTMR10 
Exome Variant ServerMTMR10
ExAC (Exome Aggregation Consortium)ENSG00000166912
GNOMAD BrowserENSG00000166912
Genetic variants : HAPMAP54893
Genomic Variants (DGV)MTMR10 [DGVbeta]
DECIPHERMTMR10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMTMR10 
Mutations
ICGC Data PortalMTMR10 
TCGA Data PortalMTMR10 
Broad Tumor PortalMTMR10
OASIS PortalMTMR10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTMR10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTMR10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTMR10
DgiDB (Drug Gene Interaction Database)MTMR10
DoCM (Curated mutations)MTMR10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTMR10 (select a term)
intoGenMTMR10
Cancer3DMTMR10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMTMR10
Genetic Testing Registry MTMR10
NextProtQ9NXD2 [Medical]
TSGene54893
GENETestsMTMR10
Target ValidationMTMR10
Huge Navigator MTMR10 [HugePedia]
snp3D : Map Gene to Disease54893
BioCentury BCIQMTMR10
ClinGenMTMR10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54893
Chemical/Pharm GKB GenePA128394676
Clinical trialMTMR10
Miscellaneous
canSAR (ICR)MTMR10 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTMR10
EVEXMTMR10
GoPubMedMTMR10
iHOPMTMR10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:18:10 CET 2017

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