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MTMR11 (myotubularin related protein 11)

Identity

Alias_symbol (synonym)CRA
Other alias
HGNC (Hugo) MTMR11
LocusID (NCBI) 10903
Atlas_Id 70557
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149900543 and ends at 149908791 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LRP11 (6q25.1) / MTMR11 (1q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTMR11   24307
Cards
Entrez_Gene (NCBI)MTMR11  10903  myotubularin related protein 11
AliasesCRA
GeneCards (Weizmann)MTMR11
Ensembl hg19 (Hinxton)ENSG00000014914 [Gene_View]  chr1:149900543-149908791 [Contig_View]  MTMR11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000014914 [Gene_View]  chr1:149900543-149908791 [Contig_View]  MTMR11 [Vega]
ICGC DataPortalENSG00000014914
TCGA cBioPortalMTMR11
AceView (NCBI)MTMR11
Genatlas (Paris)MTMR11
WikiGenes10903
SOURCE (Princeton)MTMR11
Genetics Home Reference (NIH)MTMR11
Genomic and cartography
GoldenPath hg19 (UCSC)MTMR11  -     chr1:149900543-149908791 -  1q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MTMR11  -     1q21.2   [Description]    (hg38-Dec_2013)
EnsemblMTMR11 - 1q21.2 [CytoView hg19]  MTMR11 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIMTMR11 [Mapview hg19]  MTMR11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097000 AK296094 AK298775 AK304691 AK304820
RefSeq transcript (Entrez)NM_001145862 NM_006697 NM_181873
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)MTMR11
Cluster EST : UnigeneHs.425144 [ NCBI ]
CGAP (NCI)Hs.425144
Alternative Splicing GalleryENSG00000014914
Gene ExpressionMTMR11 [ NCBI-GEO ]   MTMR11 [ EBI - ARRAY_EXPRESS ]   MTMR11 [ SEEK ]   MTMR11 [ MEM ]
Gene Expression Viewer (FireBrowse)MTMR11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10903
GTEX Portal (Tissue expression)MTMR11
Protein : pattern, domain, 3D structure
UniProt/SwissProtA4FU01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA4FU01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA4FU01
Splice isoforms : SwissVarA4FU01
PhosPhoSitePlusA4FU01
Domaine pattern : Prosite (Expaxy)PPASE_MYOTUBULARIN (PS51339)   
Domains : Interpro (EBI)MTMR11    MTMR12-like_C    Myotubularin-like_Pase_dom    Myotubularin_fam    Prot-tyrosine_phosphatase-like   
Domain families : Pfam (Sanger)3-PAP (PF12578)    Myotub-related (PF06602)   
Domain families : Pfam (NCBI)pfam12578    pfam06602   
Conserved Domain (NCBI)MTMR11
DMDM Disease mutations10903
Blocks (Seattle)MTMR11
SuperfamilyA4FU01
Human Protein AtlasENSG00000014914
Peptide AtlasA4FU01
HPRD16748
IPIIPI00892941   IPI00894131   IPI00894262   IPI00376863   IPI00009141   IPI00915025   IPI00908459   
Protein Interaction databases
DIP (DOE-UCLA)A4FU01
IntAct (EBI)A4FU01
FunCoupENSG00000014914
BioGRIDMTMR11
STRING (EMBL)MTMR11
ZODIACMTMR11
Ontologies - Pathways
QuickGOA4FU01
Ontology : AmiGOextracellular exosome  
Ontology : EGO-EBIextracellular exosome  
NDEx NetworkMTMR11
Atlas of Cancer Signalling NetworkMTMR11
Wikipedia pathwaysMTMR11
Orthology - Evolution
OrthoDB10903
GeneTree (enSembl)ENSG00000014914
Phylogenetic Trees/Animal Genes : TreeFamMTMR11
HOVERGENA4FU01
HOGENOMA4FU01
Homologs : HomoloGeneMTMR11
Homology/Alignments : Family Browser (UCSC)MTMR11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTMR11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTMR11
dbVarMTMR11
ClinVarMTMR11
1000_GenomesMTMR11 
Exome Variant ServerMTMR11
ExAC (Exome Aggregation Consortium)MTMR11 (select the gene name)
Genetic variants : HAPMAP10903
Genomic Variants (DGV)MTMR11 [DGVbeta]
DECIPHER (Syndromes)1:149900543-149908791  ENSG00000014914
CONAN: Copy Number AnalysisMTMR11 
Mutations
ICGC Data PortalMTMR11 
TCGA Data PortalMTMR11 
Broad Tumor PortalMTMR11
OASIS PortalMTMR11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTMR11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTMR11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTMR11
DgiDB (Drug Gene Interaction Database)MTMR11
DoCM (Curated mutations)MTMR11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTMR11 (select a term)
intoGenMTMR11
Cancer3DMTMR11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMTMR11
Genetic Testing Registry MTMR11
NextProtA4FU01 [Medical]
TSGene10903
GENETestsMTMR11
Huge Navigator MTMR11 [HugePedia]
snp3D : Map Gene to Disease10903
BioCentury BCIQMTMR11
ClinGenMTMR11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10903
Chemical/Pharm GKB GenePA142671303
Clinical trialMTMR11
Miscellaneous
canSAR (ICR)MTMR11 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTMR11
EVEXMTMR11
GoPubMedMTMR11
iHOPMTMR11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:05 CET 2017

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