Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MTMR7 (myotubularin related protein 7)

Identity

Other alias-
HGNC (Hugo) MTMR7
LocusID (NCBI) 9108
Atlas_Id 70560
Location 8p22  [Link to chromosome band 8p22]
Location_base_pair Starts at 17154306 and ends at 17271040 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CUX1 (7q22.1) / MTMR7 (8p22)SRBD1 (2p21) / MTMR7 (8p22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTMR7   7454
Cards
Entrez_Gene (NCBI)MTMR7  9108  myotubularin related protein 7
Aliases
GeneCards (Weizmann)MTMR7
Ensembl hg19 (Hinxton)ENSG00000003987 [Gene_View]  chr8:17154306-17271040 [Contig_View]  MTMR7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000003987 [Gene_View]  chr8:17154306-17271040 [Contig_View]  MTMR7 [Vega]
ICGC DataPortalENSG00000003987
TCGA cBioPortalMTMR7
AceView (NCBI)MTMR7
Genatlas (Paris)MTMR7
WikiGenes9108
SOURCE (Princeton)MTMR7
Genetics Home Reference (NIH)MTMR7
Genomic and cartography
GoldenPath hg19 (UCSC)MTMR7  -     chr8:17154306-17271040 -  8p22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MTMR7  -     8p22   [Description]    (hg38-Dec_2013)
EnsemblMTMR7 - 8p22 [CytoView hg19]  MTMR7 - 8p22 [CytoView hg38]
Mapping of homologs : NCBIMTMR7 [Mapview hg19]  MTMR7 [Mapview hg38]
OMIM603562   
Gene and transcription
Genbank (Entrez)AF073482 AK123201 AK294468 AK303762 AK303803
RefSeq transcript (Entrez)NM_004686
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)MTMR7
Cluster EST : UnigeneHs.625674 [ NCBI ]
CGAP (NCI)Hs.625674
Alternative Splicing GalleryENSG00000003987
Gene ExpressionMTMR7 [ NCBI-GEO ]   MTMR7 [ EBI - ARRAY_EXPRESS ]   MTMR7 [ SEEK ]   MTMR7 [ MEM ]
Gene Expression Viewer (FireBrowse)MTMR7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9108
GTEX Portal (Tissue expression)MTMR7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y216   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y216  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y216
Splice isoforms : SwissVarQ9Y216
PhosPhoSitePlusQ9Y216
Domaine pattern : Prosite (Expaxy)PPASE_MYOTUBULARIN (PS51339)    TYR_PHOSPHATASE_1 (PS00383)    TYR_PHOSPHATASE_2 (PS50056)   
Domains : Interpro (EBI)MTMR7    Myotubularin-like_Pase_dom    Myotubularin_fam    PH_like_dom    Prot-tyrosine_phosphatase-like    Tyr/Dual-sp_Pase    Tyr_Pase_AS   
Domain families : Pfam (Sanger)Myotub-related (PF06602)   
Domain families : Pfam (NCBI)pfam06602   
Conserved Domain (NCBI)MTMR7
DMDM Disease mutations9108
Blocks (Seattle)MTMR7
SuperfamilyQ9Y216
Human Protein AtlasENSG00000003987
Peptide AtlasQ9Y216
HPRD16027
IPIIPI00470949   IPI00514581   IPI01011180   IPI00981148   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y216
IntAct (EBI)Q9Y216
FunCoupENSG00000003987
BioGRIDMTMR7
STRING (EMBL)MTMR7
ZODIACMTMR7
Ontologies - Pathways
QuickGOQ9Y216
Ontology : AmiGOprotein tyrosine phosphatase activity  protein binding  cytosol  protein dephosphorylation  phospholipid metabolic process  phosphatidylinositol biosynthetic process  membrane  peptidyl-tyrosine dephosphorylation  peptidyl-tyrosine dephosphorylation  small molecule metabolic process  inositol phosphate dephosphorylation  phosphatidylinositol dephosphorylation  phosphatidylinositol phosphate phosphatase activity  
Ontology : EGO-EBIprotein tyrosine phosphatase activity  protein binding  cytosol  protein dephosphorylation  phospholipid metabolic process  phosphatidylinositol biosynthetic process  membrane  peptidyl-tyrosine dephosphorylation  peptidyl-tyrosine dephosphorylation  small molecule metabolic process  inositol phosphate dephosphorylation  phosphatidylinositol dephosphorylation  phosphatidylinositol phosphate phosphatase activity  
Pathways : KEGGFructose and mannose metabolism   
NDEx NetworkMTMR7
Atlas of Cancer Signalling NetworkMTMR7
Wikipedia pathwaysMTMR7
Orthology - Evolution
OrthoDB9108
GeneTree (enSembl)ENSG00000003987
Phylogenetic Trees/Animal Genes : TreeFamMTMR7
HOVERGENQ9Y216
HOGENOMQ9Y216
Homologs : HomoloGeneMTMR7
Homology/Alignments : Family Browser (UCSC)MTMR7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTMR7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTMR7
dbVarMTMR7
ClinVarMTMR7
1000_GenomesMTMR7 
Exome Variant ServerMTMR7
ExAC (Exome Aggregation Consortium)MTMR7 (select the gene name)
Genetic variants : HAPMAP9108
Genomic Variants (DGV)MTMR7 [DGVbeta]
DECIPHER (Syndromes)8:17154306-17271040  ENSG00000003987
CONAN: Copy Number AnalysisMTMR7 
Mutations
ICGC Data PortalMTMR7 
TCGA Data PortalMTMR7 
Broad Tumor PortalMTMR7
OASIS PortalMTMR7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTMR7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTMR7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTMR7
DgiDB (Drug Gene Interaction Database)MTMR7
DoCM (Curated mutations)MTMR7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTMR7 (select a term)
intoGenMTMR7
Cancer3DMTMR7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603562   
Orphanet
MedgenMTMR7
Genetic Testing Registry MTMR7
NextProtQ9Y216 [Medical]
TSGene9108
GENETestsMTMR7
Huge Navigator MTMR7 [HugePedia]
snp3D : Map Gene to Disease9108
BioCentury BCIQMTMR7
ClinGenMTMR7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9108
Chemical/Pharm GKB GenePA31257
Clinical trialMTMR7
Miscellaneous
canSAR (ICR)MTMR7 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTMR7
EVEXMTMR7
GoPubMedMTMR7
iHOPMTMR7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:06 CET 2017

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