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MTMR9 (myotubularin related protein 9)

Identity

Alias_namesC8orf9
MTMR8
myotubularin related protein 8
Alias_symbol (synonym)DKFZp434K171
LIP-STYX
Other alias
HGNC (Hugo) MTMR9
LocusID (NCBI) 66036
Atlas_Id 46689
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 11142000 and ends at 11185654 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MARK3 (14q32.32) / MTMR9 (8p23.1)MTMR9 (8p23.1) / MTMR9 (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTMR9   14596
Cards
Entrez_Gene (NCBI)MTMR9  66036  myotubularin related protein 9
AliasesC8orf9; LIP-STYX; MTMR8
GeneCards (Weizmann)MTMR9
Ensembl hg19 (Hinxton)ENSG00000104643 [Gene_View]  chr8:11142000-11185654 [Contig_View]  MTMR9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104643 [Gene_View]  chr8:11142000-11185654 [Contig_View]  MTMR9 [Vega]
ICGC DataPortalENSG00000104643
TCGA cBioPortalMTMR9
AceView (NCBI)MTMR9
Genatlas (Paris)MTMR9
WikiGenes66036
SOURCE (Princeton)MTMR9
Genetics Home Reference (NIH)MTMR9
Genomic and cartography
GoldenPath hg19 (UCSC)MTMR9  -     chr8:11142000-11185654 +  8p23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MTMR9  -     8p23.1   [Description]    (hg38-Dec_2013)
EnsemblMTMR9 - 8p23.1 [CytoView hg19]  MTMR9 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBIMTMR9 [Mapview hg19]  MTMR9 [Mapview hg38]
OMIM606260   
Gene and transcription
Genbank (Entrez)AF052099 AJ297823 AK000444 AK022071 AK223525
RefSeq transcript (Entrez)NM_015458
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_077531 NW_004929336
Consensus coding sequences : CCDS (NCBI)MTMR9
Cluster EST : UnigeneHs.591395 [ NCBI ]
CGAP (NCI)Hs.591395
Alternative Splicing GalleryENSG00000104643
Gene ExpressionMTMR9 [ NCBI-GEO ]   MTMR9 [ EBI - ARRAY_EXPRESS ]   MTMR9 [ SEEK ]   MTMR9 [ MEM ]
Gene Expression Viewer (FireBrowse)MTMR9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)66036
GTEX Portal (Tissue expression)MTMR9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QG7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QG7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QG7
Splice isoforms : SwissVarQ96QG7
PhosPhoSitePlusQ96QG7
Domaine pattern : Prosite (Expaxy)PPASE_MYOTUBULARIN (PS51339)   
Domains : Interpro (EBI)Myotubularin-like_Pase_dom    Myotubularin_fam    PH_dom-like    Prot-tyrosine_phosphatase-like   
Domain families : Pfam (Sanger)Myotub-related (PF06602)   
Domain families : Pfam (NCBI)pfam06602   
Conserved Domain (NCBI)MTMR9
DMDM Disease mutations66036
Blocks (Seattle)MTMR9
SuperfamilyQ96QG7
Human Protein AtlasENSG00000104643
Peptide AtlasQ96QG7
HPRD09377
IPIIPI00102580   IPI00976459   IPI00978921   
Protein Interaction databases
DIP (DOE-UCLA)Q96QG7
IntAct (EBI)Q96QG7
FunCoupENSG00000104643
BioGRIDMTMR9
STRING (EMBL)MTMR9
ZODIACMTMR9
Ontologies - Pathways
QuickGOQ96QG7
Ontology : AmiGOprotein binding  cytoplasm  enzyme regulator activity  regulation of catalytic activity  
Ontology : EGO-EBIprotein binding  cytoplasm  enzyme regulator activity  regulation of catalytic activity  
NDEx NetworkMTMR9
Atlas of Cancer Signalling NetworkMTMR9
Wikipedia pathwaysMTMR9
Orthology - Evolution
OrthoDB66036
GeneTree (enSembl)ENSG00000104643
Phylogenetic Trees/Animal Genes : TreeFamMTMR9
HOVERGENQ96QG7
HOGENOMQ96QG7
Homologs : HomoloGeneMTMR9
Homology/Alignments : Family Browser (UCSC)MTMR9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTMR9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTMR9
dbVarMTMR9
ClinVarMTMR9
1000_GenomesMTMR9 
Exome Variant ServerMTMR9
ExAC (Exome Aggregation Consortium)MTMR9 (select the gene name)
Genetic variants : HAPMAP66036
Genomic Variants (DGV)MTMR9 [DGVbeta]
DECIPHER (Syndromes)8:11142000-11185654  ENSG00000104643
CONAN: Copy Number AnalysisMTMR9 
Mutations
ICGC Data PortalMTMR9 
TCGA Data PortalMTMR9 
Broad Tumor PortalMTMR9
OASIS PortalMTMR9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTMR9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTMR9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTMR9
DgiDB (Drug Gene Interaction Database)MTMR9
DoCM (Curated mutations)MTMR9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTMR9 (select a term)
intoGenMTMR9
Cancer3DMTMR9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606260   
Orphanet
MedgenMTMR9
Genetic Testing Registry MTMR9
NextProtQ96QG7 [Medical]
TSGene66036
GENETestsMTMR9
Huge Navigator MTMR9 [HugePedia]
snp3D : Map Gene to Disease66036
BioCentury BCIQMTMR9
ClinGenMTMR9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD66036
Chemical/Pharm GKB GenePA37904
Clinical trialMTMR9
Miscellaneous
canSAR (ICR)MTMR9 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTMR9
EVEXMTMR9
GoPubMedMTMR9
iHOPMTMR9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:17:37 CET 2017

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