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MTRNR2L1 (MT-RNR2-like 1)

Identity

Other aliasHN1
HGNC (Hugo) MTRNR2L1
LocusID (NCBI) 100462977
Atlas_Id 56180
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 22022437 and ends at 22023991 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTRNR2L1   37155
Cards
Entrez_Gene (NCBI)MTRNR2L1  100462977  MT-RNR2-like 1
AliasesHN1
GeneCards (Weizmann)MTRNR2L1
Ensembl hg19 (Hinxton)ENSG00000256618 [Gene_View]  chr17:22022437-22023991 [Contig_View]  MTRNR2L1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000256618 [Gene_View]  chr17:22022437-22023991 [Contig_View]  MTRNR2L1 [Vega]
ICGC DataPortalENSG00000256618
TCGA cBioPortalMTRNR2L1
AceView (NCBI)MTRNR2L1
Genatlas (Paris)MTRNR2L1
WikiGenes100462977
SOURCE (Princeton)MTRNR2L1
Genetics Home Reference (NIH)MTRNR2L1
Genomic and cartography
GoldenPath hg19 (UCSC)MTRNR2L1  -     chr17:22022437-22023991 +  17p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MTRNR2L1  -     17p11.2   [Description]    (hg38-Dec_2013)
EnsemblMTRNR2L1 - 17p11.2 [CytoView hg19]  MTRNR2L1 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIMTRNR2L1 [Mapview hg19]  MTRNR2L1 [Mapview hg38]
OMIM616985   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001190452
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MTRNR2L1
Cluster EST : UnigeneHs.740185 [ NCBI ]
CGAP (NCI)Hs.740185
Alternative Splicing GalleryENSG00000256618
Gene ExpressionMTRNR2L1 [ NCBI-GEO ]   MTRNR2L1 [ EBI - ARRAY_EXPRESS ]   MTRNR2L1 [ SEEK ]   MTRNR2L1 [ MEM ]
Gene Expression Viewer (FireBrowse)MTRNR2L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100462977
GTEX Portal (Tissue expression)MTRNR2L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CJ68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CJ68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CJ68
Splice isoforms : SwissVarP0CJ68
PhosPhoSitePlusP0CJ68
Domains : Interpro (EBI)Humanin   
Domain families : Pfam (Sanger)Humanin (PF15040)   
Domain families : Pfam (NCBI)pfam15040   
Conserved Domain (NCBI)MTRNR2L1
DMDM Disease mutations100462977
Blocks (Seattle)MTRNR2L1
SuperfamilyP0CJ68
Human Protein AtlasENSG00000256618
Peptide AtlasP0CJ68
IPIIPI00974145   
Protein Interaction databases
DIP (DOE-UCLA)P0CJ68
IntAct (EBI)P0CJ68
FunCoupENSG00000256618
BioGRIDMTRNR2L1
STRING (EMBL)MTRNR2L1
ZODIACMTRNR2L1
Ontologies - Pathways
QuickGOP0CJ68
Ontology : AmiGOextracellular region  cytoplasm  
Ontology : EGO-EBIextracellular region  cytoplasm  
NDEx NetworkMTRNR2L1
Atlas of Cancer Signalling NetworkMTRNR2L1
Wikipedia pathwaysMTRNR2L1
Orthology - Evolution
OrthoDB100462977
GeneTree (enSembl)ENSG00000256618
Phylogenetic Trees/Animal Genes : TreeFamMTRNR2L1
HOVERGENP0CJ68
HOGENOMP0CJ68
Homologs : HomoloGeneMTRNR2L1
Homology/Alignments : Family Browser (UCSC)MTRNR2L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTRNR2L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTRNR2L1
dbVarMTRNR2L1
ClinVarMTRNR2L1
1000_GenomesMTRNR2L1 
Exome Variant ServerMTRNR2L1
ExAC (Exome Aggregation Consortium)MTRNR2L1 (select the gene name)
Genetic variants : HAPMAP100462977
Genomic Variants (DGV)MTRNR2L1 [DGVbeta]
DECIPHER (Syndromes)17:22022437-22023991  ENSG00000256618
CONAN: Copy Number AnalysisMTRNR2L1 
Mutations
ICGC Data PortalMTRNR2L1 
TCGA Data PortalMTRNR2L1 
Broad Tumor PortalMTRNR2L1
OASIS PortalMTRNR2L1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMTRNR2L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTRNR2L1
DgiDB (Drug Gene Interaction Database)MTRNR2L1
DoCM (Curated mutations)MTRNR2L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTRNR2L1 (select a term)
intoGenMTRNR2L1
Cancer3DMTRNR2L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616985   
Orphanet
MedgenMTRNR2L1
Genetic Testing Registry MTRNR2L1
NextProtP0CJ68 [Medical]
TSGene100462977
GENETestsMTRNR2L1
Huge Navigator MTRNR2L1 [HugePedia]
snp3D : Map Gene to Disease100462977
BioCentury BCIQMTRNR2L1
ClinGenMTRNR2L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100462977
Chemical/Pharm GKB GenePA165432208
Clinical trialMTRNR2L1
Miscellaneous
canSAR (ICR)MTRNR2L1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTRNR2L1
EVEXMTRNR2L1
GoPubMedMTRNR2L1
iHOPMTRNR2L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:17:39 CET 2017

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