Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MTRNR2L10 (MT-RNR2-like 10)

Identity

Other aliasHN10
HGNC (Hugo) MTRNR2L10
LocusID (NCBI) 100463488
Atlas_Id 70567
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 55181391 and ends at 55182511 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTRNR2L10   37167
Cards
Entrez_Gene (NCBI)MTRNR2L10  100463488  MT-RNR2-like 10
AliasesHN10
GeneCards (Weizmann)MTRNR2L10
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:55181391-55182511 [Contig_View]  MTRNR2L10 [Vega]
TCGA cBioPortalMTRNR2L10
AceView (NCBI)MTRNR2L10
Genatlas (Paris)MTRNR2L10
WikiGenes100463488
SOURCE (Princeton)MTRNR2L10
Genetics Home Reference (NIH)MTRNR2L10
Genomic and cartography
GoldenPath hg38 (UCSC)MTRNR2L10  -     chrX:55181391-55182511 -  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MTRNR2L10  -     Xp11.21   [Description]    (hg19-Feb_2009)
EnsemblMTRNR2L10 - Xp11.21 [CytoView hg19]  MTRNR2L10 - Xp11.21 [CytoView hg38]
Mapping of homologs : NCBIMTRNR2L10 [Mapview hg19]  MTRNR2L10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001190708
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MTRNR2L10
Cluster EST : UnigeneHs.722730 [ NCBI ]
CGAP (NCI)Hs.722730
Gene ExpressionMTRNR2L10 [ NCBI-GEO ]   MTRNR2L10 [ EBI - ARRAY_EXPRESS ]   MTRNR2L10 [ SEEK ]   MTRNR2L10 [ MEM ]
Gene Expression Viewer (FireBrowse)MTRNR2L10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100463488
GTEX Portal (Tissue expression)MTRNR2L10
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CJ77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CJ77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CJ77
Splice isoforms : SwissVarP0CJ77
PhosPhoSitePlusP0CJ77
Domains : Interpro (EBI)Humanin   
Domain families : Pfam (Sanger)Humanin (PF15040)   
Domain families : Pfam (NCBI)pfam15040   
Conserved Domain (NCBI)MTRNR2L10
DMDM Disease mutations100463488
Blocks (Seattle)MTRNR2L10
SuperfamilyP0CJ77
Peptide AtlasP0CJ77
IPIIPI00973753   
Protein Interaction databases
DIP (DOE-UCLA)P0CJ77
IntAct (EBI)P0CJ77
BioGRIDMTRNR2L10
STRING (EMBL)MTRNR2L10
ZODIACMTRNR2L10
Ontologies - Pathways
QuickGOP0CJ77
Ontology : AmiGOextracellular region  cytoplasm  
Ontology : EGO-EBIextracellular region  cytoplasm  
NDEx NetworkMTRNR2L10
Atlas of Cancer Signalling NetworkMTRNR2L10
Wikipedia pathwaysMTRNR2L10
Orthology - Evolution
OrthoDB100463488
Phylogenetic Trees/Animal Genes : TreeFamMTRNR2L10
HOVERGENP0CJ77
HOGENOMP0CJ77
Homologs : HomoloGeneMTRNR2L10
Homology/Alignments : Family Browser (UCSC)MTRNR2L10
Gene fusions - Rearrangements
Tumor Fusion PortalMTRNR2L10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTRNR2L10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTRNR2L10
dbVarMTRNR2L10
ClinVarMTRNR2L10
1000_GenomesMTRNR2L10 
Exome Variant ServerMTRNR2L10
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100463488
Genomic Variants (DGV)MTRNR2L10 [DGVbeta]
DECIPHERMTRNR2L10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMTRNR2L10 
Mutations
ICGC Data PortalMTRNR2L10 
TCGA Data PortalMTRNR2L10 
Broad Tumor PortalMTRNR2L10
OASIS PortalMTRNR2L10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMTRNR2L10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTRNR2L10
DgiDB (Drug Gene Interaction Database)MTRNR2L10
DoCM (Curated mutations)MTRNR2L10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTRNR2L10 (select a term)
intoGenMTRNR2L10
Cancer3DMTRNR2L10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMTRNR2L10
MedgenMTRNR2L10
Genetic Testing Registry MTRNR2L10
NextProtP0CJ77 [Medical]
TSGene100463488
GENETestsMTRNR2L10
Target ValidationMTRNR2L10
Huge Navigator MTRNR2L10 [HugePedia]
snp3D : Map Gene to Disease100463488
BioCentury BCIQMTRNR2L10
ClinGenMTRNR2L10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100463488
Chemical/Pharm GKB GenePA165757021
Clinical trialMTRNR2L10
Miscellaneous
canSAR (ICR)MTRNR2L10 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTRNR2L10
EVEXMTRNR2L10
GoPubMedMTRNR2L10
iHOPMTRNR2L10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:00:13 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.