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MTRNR2L2 (MT-RNR2-like 2)

Identity

Other aliasHN2
HGNC (Hugo) MTRNR2L2
LocusID (NCBI) 100462981
Atlas_Id 70568
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 79945819 and ends at 79946854 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MIR6723 (1p36.33) / MTRNR2L2 (5q14.1)MTATP6P1 () / MTRNR2L2 (5q14.1)MTRNR2L2 (5q14.1) / PTCH1 (9q22.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTRNR2L2   37156
Cards
Entrez_Gene (NCBI)MTRNR2L2  100462981  MT-RNR2-like 2
AliasesHN2
GeneCards (Weizmann)MTRNR2L2
Ensembl hg19 (Hinxton) [Gene_View]  chr5:79945819-79946854 [Contig_View]  MTRNR2L2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:79945819-79946854 [Contig_View]  MTRNR2L2 [Vega]
TCGA cBioPortalMTRNR2L2
AceView (NCBI)MTRNR2L2
Genatlas (Paris)MTRNR2L2
WikiGenes100462981
SOURCE (Princeton)MTRNR2L2
Genetics Home Reference (NIH)MTRNR2L2
Genomic and cartography
GoldenPath hg19 (UCSC)MTRNR2L2  -     chr5:79945819-79946854 -  5q14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MTRNR2L2  -     5q14.1   [Description]    (hg38-Dec_2013)
EnsemblMTRNR2L2 - 5q14.1 [CytoView hg19]  MTRNR2L2 - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBIMTRNR2L2 [Mapview hg19]  MTRNR2L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001190470
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)MTRNR2L2
Cluster EST : UnigeneHs.666077 [ NCBI ]
CGAP (NCI)Hs.666077
Gene ExpressionMTRNR2L2 [ NCBI-GEO ]   MTRNR2L2 [ EBI - ARRAY_EXPRESS ]   MTRNR2L2 [ SEEK ]   MTRNR2L2 [ MEM ]
Gene Expression Viewer (FireBrowse)MTRNR2L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100462981
GTEX Portal (Tissue expression)MTRNR2L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CJ69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CJ69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CJ69
Splice isoforms : SwissVarP0CJ69
PhosPhoSitePlusP0CJ69
Domains : Interpro (EBI)Humanin   
Domain families : Pfam (Sanger)Humanin (PF15040)   
Domain families : Pfam (NCBI)pfam15040   
Conserved Domain (NCBI)MTRNR2L2
DMDM Disease mutations100462981
Blocks (Seattle)MTRNR2L2
SuperfamilyP0CJ69
Peptide AtlasP0CJ69
IPIIPI00974193   
Protein Interaction databases
DIP (DOE-UCLA)P0CJ69
IntAct (EBI)P0CJ69
BioGRIDMTRNR2L2
STRING (EMBL)MTRNR2L2
ZODIACMTRNR2L2
Ontologies - Pathways
QuickGOP0CJ69
Ontology : AmiGOextracellular region  cytoplasm  
Ontology : EGO-EBIextracellular region  cytoplasm  
NDEx NetworkMTRNR2L2
Atlas of Cancer Signalling NetworkMTRNR2L2
Wikipedia pathwaysMTRNR2L2
Orthology - Evolution
OrthoDB100462981
Phylogenetic Trees/Animal Genes : TreeFamMTRNR2L2
HOVERGENP0CJ69
HOGENOMP0CJ69
Homologs : HomoloGeneMTRNR2L2
Homology/Alignments : Family Browser (UCSC)MTRNR2L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTRNR2L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTRNR2L2
dbVarMTRNR2L2
ClinVarMTRNR2L2
1000_GenomesMTRNR2L2 
Exome Variant ServerMTRNR2L2
ExAC (Exome Aggregation Consortium)MTRNR2L2 (select the gene name)
Genetic variants : HAPMAP100462981
Genomic Variants (DGV)MTRNR2L2 [DGVbeta]
DECIPHER (Syndromes)5:79945819-79946854  
CONAN: Copy Number AnalysisMTRNR2L2 
Mutations
ICGC Data PortalMTRNR2L2 
TCGA Data PortalMTRNR2L2 
Broad Tumor PortalMTRNR2L2
OASIS PortalMTRNR2L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTRNR2L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTRNR2L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTRNR2L2
DgiDB (Drug Gene Interaction Database)MTRNR2L2
DoCM (Curated mutations)MTRNR2L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTRNR2L2 (select a term)
intoGenMTRNR2L2
Cancer3DMTRNR2L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMTRNR2L2
Genetic Testing Registry MTRNR2L2
NextProtP0CJ69 [Medical]
TSGene100462981
GENETestsMTRNR2L2
Huge Navigator MTRNR2L2 [HugePedia]
snp3D : Map Gene to Disease100462981
BioCentury BCIQMTRNR2L2
ClinGenMTRNR2L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100462981
Chemical/Pharm GKB GenePA165660387
Clinical trialMTRNR2L2
Miscellaneous
canSAR (ICR)MTRNR2L2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTRNR2L2
EVEXMTRNR2L2
GoPubMedMTRNR2L2
iHOPMTRNR2L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:08 CET 2017

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