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MTRNR2L3 (MT-RNR2-like 3)

Identity

Other aliasHN3
HGNC (Hugo) MTRNR2L3
LocusID (NCBI) 100462983
Atlas_Id 70569
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 57358440 and ends at 57359822 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTRNR2L3   37157
Cards
Entrez_Gene (NCBI)MTRNR2L3  100462983  MT-RNR2-like 3
AliasesHN3
GeneCards (Weizmann)MTRNR2L3
Ensembl hg19 (Hinxton)ENSG00000256222 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256222 [Gene_View]  chr20:57358440-57359822 [Contig_View]  MTRNR2L3 [Vega]
ICGC DataPortalENSG00000256222
TCGA cBioPortalMTRNR2L3
AceView (NCBI)MTRNR2L3
Genatlas (Paris)MTRNR2L3
WikiGenes100462983
SOURCE (Princeton)MTRNR2L3
Genetics Home Reference (NIH)MTRNR2L3
Genomic and cartography
GoldenPath hg38 (UCSC)MTRNR2L3  -     chr20:57358440-57359822 -  20q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MTRNR2L3  -     20q13.31   [Description]    (hg19-Feb_2009)
EnsemblMTRNR2L3 - 20q13.31 [CytoView hg19]  MTRNR2L3 - 20q13.31 [CytoView hg38]
Mapping of homologs : NCBIMTRNR2L3 [Mapview hg19]  MTRNR2L3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001190472
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MTRNR2L3
Cluster EST : UnigeneHs.727477 [ NCBI ]
CGAP (NCI)Hs.727477
Alternative Splicing GalleryENSG00000256222
Gene ExpressionMTRNR2L3 [ NCBI-GEO ]   MTRNR2L3 [ EBI - ARRAY_EXPRESS ]   MTRNR2L3 [ SEEK ]   MTRNR2L3 [ MEM ]
Gene Expression Viewer (FireBrowse)MTRNR2L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100462983
GTEX Portal (Tissue expression)MTRNR2L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CJ70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CJ70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CJ70
Splice isoforms : SwissVarP0CJ70
PhosPhoSitePlusP0CJ70
Domains : Interpro (EBI)Humanin   
Domain families : Pfam (Sanger)Humanin (PF15040)   
Domain families : Pfam (NCBI)pfam15040   
Conserved Domain (NCBI)MTRNR2L3
DMDM Disease mutations100462983
Blocks (Seattle)MTRNR2L3
SuperfamilyP0CJ70
Human Protein AtlasENSG00000256222
Peptide AtlasP0CJ70
IPIIPI00974234   
Protein Interaction databases
DIP (DOE-UCLA)P0CJ70
IntAct (EBI)P0CJ70
FunCoupENSG00000256222
BioGRIDMTRNR2L3
STRING (EMBL)MTRNR2L3
ZODIACMTRNR2L3
Ontologies - Pathways
QuickGOP0CJ70
Ontology : AmiGOextracellular region  cytoplasm  
Ontology : EGO-EBIextracellular region  cytoplasm  
NDEx NetworkMTRNR2L3
Atlas of Cancer Signalling NetworkMTRNR2L3
Wikipedia pathwaysMTRNR2L3
Orthology - Evolution
OrthoDB100462983
GeneTree (enSembl)ENSG00000256222
Phylogenetic Trees/Animal Genes : TreeFamMTRNR2L3
HOVERGENP0CJ70
HOGENOMP0CJ70
Homologs : HomoloGeneMTRNR2L3
Homology/Alignments : Family Browser (UCSC)MTRNR2L3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTRNR2L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTRNR2L3
dbVarMTRNR2L3
ClinVarMTRNR2L3
1000_GenomesMTRNR2L3 
Exome Variant ServerMTRNR2L3
ExAC (Exome Aggregation Consortium)MTRNR2L3 (select the gene name)
Genetic variants : HAPMAP100462983
Genomic Variants (DGV)MTRNR2L3 [DGVbeta]
DECIPHERMTRNR2L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMTRNR2L3 
Mutations
ICGC Data PortalMTRNR2L3 
TCGA Data PortalMTRNR2L3 
Broad Tumor PortalMTRNR2L3
OASIS PortalMTRNR2L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTRNR2L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTRNR2L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTRNR2L3
DgiDB (Drug Gene Interaction Database)MTRNR2L3
DoCM (Curated mutations)MTRNR2L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTRNR2L3 (select a term)
intoGenMTRNR2L3
Cancer3DMTRNR2L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMTRNR2L3
Genetic Testing Registry MTRNR2L3
NextProtP0CJ70 [Medical]
TSGene100462983
GENETestsMTRNR2L3
Target ValidationMTRNR2L3
Huge Navigator MTRNR2L3 [HugePedia]
snp3D : Map Gene to Disease100462983
BioCentury BCIQMTRNR2L3
ClinGenMTRNR2L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100462983
Chemical/Pharm GKB GenePA165392403
Clinical trialMTRNR2L3
Miscellaneous
canSAR (ICR)MTRNR2L3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTRNR2L3
EVEXMTRNR2L3
GoPubMedMTRNR2L3
iHOPMTRNR2L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:29 CEST 2017

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