Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MTRNR2L4 (MT-RNR2-like 4)

Identity

Other aliasHN4
HGNC (Hugo) MTRNR2L4
LocusID (NCBI) 100463285
Atlas_Id 70570
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3371053 and ends at 3372283 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTRNR2L4   37161
Cards
Entrez_Gene (NCBI)MTRNR2L4  100463285  MT-RNR2-like 4
AliasesHN4
GeneCards (Weizmann)MTRNR2L4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:3371053-3372283 [Contig_View]  MTRNR2L4 [Vega]
TCGA cBioPortalMTRNR2L4
AceView (NCBI)MTRNR2L4
Genatlas (Paris)MTRNR2L4
WikiGenes100463285
SOURCE (Princeton)MTRNR2L4
Genetics Home Reference (NIH)MTRNR2L4
Genomic and cartography
GoldenPath hg38 (UCSC)MTRNR2L4  -     chr16:3371053-3372283 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MTRNR2L4  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblMTRNR2L4 - 16p13.3 [CytoView hg19]  MTRNR2L4 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIMTRNR2L4 [Mapview hg19]  MTRNR2L4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001190476
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MTRNR2L4
Cluster EST : UnigeneHs.639648 [ NCBI ]
CGAP (NCI)Hs.639648
Gene ExpressionMTRNR2L4 [ NCBI-GEO ]   MTRNR2L4 [ EBI - ARRAY_EXPRESS ]   MTRNR2L4 [ SEEK ]   MTRNR2L4 [ MEM ]
Gene Expression Viewer (FireBrowse)MTRNR2L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100463285
GTEX Portal (Tissue expression)MTRNR2L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CJ71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CJ71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CJ71
Splice isoforms : SwissVarP0CJ71
PhosPhoSitePlusP0CJ71
Domains : Interpro (EBI)Humanin   
Domain families : Pfam (Sanger)Humanin (PF15040)   
Domain families : Pfam (NCBI)pfam15040   
Conserved Domain (NCBI)MTRNR2L4
DMDM Disease mutations100463285
Blocks (Seattle)MTRNR2L4
SuperfamilyP0CJ71
Peptide AtlasP0CJ71
IPIIPI00974292   
Protein Interaction databases
DIP (DOE-UCLA)P0CJ71
IntAct (EBI)P0CJ71
BioGRIDMTRNR2L4
STRING (EMBL)MTRNR2L4
ZODIACMTRNR2L4
Ontologies - Pathways
QuickGOP0CJ71
Ontology : AmiGOextracellular region  cytoplasm  
Ontology : EGO-EBIextracellular region  cytoplasm  
NDEx NetworkMTRNR2L4
Atlas of Cancer Signalling NetworkMTRNR2L4
Wikipedia pathwaysMTRNR2L4
Orthology - Evolution
OrthoDB100463285
Phylogenetic Trees/Animal Genes : TreeFamMTRNR2L4
HOVERGENP0CJ71
HOGENOMP0CJ71
Homologs : HomoloGeneMTRNR2L4
Homology/Alignments : Family Browser (UCSC)MTRNR2L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTRNR2L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTRNR2L4
dbVarMTRNR2L4
ClinVarMTRNR2L4
1000_GenomesMTRNR2L4 
Exome Variant ServerMTRNR2L4
ExAC (Exome Aggregation Consortium)MTRNR2L4 (select the gene name)
Genetic variants : HAPMAP100463285
Genomic Variants (DGV)MTRNR2L4 [DGVbeta]
DECIPHERMTRNR2L4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMTRNR2L4 
Mutations
ICGC Data PortalMTRNR2L4 
TCGA Data PortalMTRNR2L4 
Broad Tumor PortalMTRNR2L4
OASIS PortalMTRNR2L4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMTRNR2L4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTRNR2L4
DgiDB (Drug Gene Interaction Database)MTRNR2L4
DoCM (Curated mutations)MTRNR2L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTRNR2L4 (select a term)
intoGenMTRNR2L4
Cancer3DMTRNR2L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMTRNR2L4
Genetic Testing Registry MTRNR2L4
NextProtP0CJ71 [Medical]
TSGene100463285
GENETestsMTRNR2L4
Target ValidationMTRNR2L4
Huge Navigator MTRNR2L4 [HugePedia]
snp3D : Map Gene to Disease100463285
BioCentury BCIQMTRNR2L4
ClinGenMTRNR2L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100463285
Chemical/Pharm GKB GenePA165450236
Clinical trialMTRNR2L4
Miscellaneous
canSAR (ICR)MTRNR2L4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTRNR2L4
EVEXMTRNR2L4
GoPubMedMTRNR2L4
iHOPMTRNR2L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:33:10 CEST 2017

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