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MTRNR2L5 (MT-RNR2-like 5)

Identity

Other aliasHN5
HGNC (Hugo) MTRNR2L5
LocusID (NCBI) 100463289
Atlas_Id 70571
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 57358750 and ends at 57360487 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTRNR2L5   37162
Cards
Entrez_Gene (NCBI)MTRNR2L5  100463289  MT-RNR2-like 5
AliasesHN5
GeneCards (Weizmann)MTRNR2L5
Ensembl hg19 (Hinxton) [Gene_View]  chr10:57358750-57360487 [Contig_View]  MTRNR2L5 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:57358750-57360487 [Contig_View]  MTRNR2L5 [Vega]
TCGA cBioPortalMTRNR2L5
AceView (NCBI)MTRNR2L5
Genatlas (Paris)MTRNR2L5
WikiGenes100463289
SOURCE (Princeton)MTRNR2L5
Genetics Home Reference (NIH)MTRNR2L5
Genomic and cartography
GoldenPath hg19 (UCSC)MTRNR2L5  -     chr10:57358750-57360487 +  10q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MTRNR2L5  -     10q21.1   [Description]    (hg38-Dec_2013)
EnsemblMTRNR2L5 - 10q21.1 [CytoView hg19]  MTRNR2L5 - 10q21.1 [CytoView hg38]
Mapping of homologs : NCBIMTRNR2L5 [Mapview hg19]  MTRNR2L5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001190478
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)MTRNR2L5
Cluster EST : UnigeneHs.727204 [ NCBI ]
CGAP (NCI)Hs.727204
Gene ExpressionMTRNR2L5 [ NCBI-GEO ]   MTRNR2L5 [ EBI - ARRAY_EXPRESS ]   MTRNR2L5 [ SEEK ]   MTRNR2L5 [ MEM ]
Gene Expression Viewer (FireBrowse)MTRNR2L5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100463289
GTEX Portal (Tissue expression)MTRNR2L5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CJ72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CJ72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CJ72
Splice isoforms : SwissVarP0CJ72
PhosPhoSitePlusP0CJ72
Domains : Interpro (EBI)Humanin   
Domain families : Pfam (Sanger)Humanin (PF15040)   
Domain families : Pfam (NCBI)pfam15040   
Conserved Domain (NCBI)MTRNR2L5
DMDM Disease mutations100463289
Blocks (Seattle)MTRNR2L5
SuperfamilyP0CJ72
Peptide AtlasP0CJ72
IPIIPI00973901   
Protein Interaction databases
DIP (DOE-UCLA)P0CJ72
IntAct (EBI)P0CJ72
BioGRIDMTRNR2L5
STRING (EMBL)MTRNR2L5
ZODIACMTRNR2L5
Ontologies - Pathways
QuickGOP0CJ72
Ontology : AmiGOextracellular region  cytoplasm  
Ontology : EGO-EBIextracellular region  cytoplasm  
NDEx NetworkMTRNR2L5
Atlas of Cancer Signalling NetworkMTRNR2L5
Wikipedia pathwaysMTRNR2L5
Orthology - Evolution
OrthoDB100463289
Phylogenetic Trees/Animal Genes : TreeFamMTRNR2L5
HOVERGENP0CJ72
HOGENOMP0CJ72
Homologs : HomoloGeneMTRNR2L5
Homology/Alignments : Family Browser (UCSC)MTRNR2L5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTRNR2L5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTRNR2L5
dbVarMTRNR2L5
ClinVarMTRNR2L5
1000_GenomesMTRNR2L5 
Exome Variant ServerMTRNR2L5
ExAC (Exome Aggregation Consortium)MTRNR2L5 (select the gene name)
Genetic variants : HAPMAP100463289
Genomic Variants (DGV)MTRNR2L5 [DGVbeta]
DECIPHER (Syndromes)10:57358750-57360487  
CONAN: Copy Number AnalysisMTRNR2L5 
Mutations
ICGC Data PortalMTRNR2L5 
TCGA Data PortalMTRNR2L5 
Broad Tumor PortalMTRNR2L5
OASIS PortalMTRNR2L5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTRNR2L5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTRNR2L5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTRNR2L5
DgiDB (Drug Gene Interaction Database)MTRNR2L5
DoCM (Curated mutations)MTRNR2L5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTRNR2L5 (select a term)
intoGenMTRNR2L5
Cancer3DMTRNR2L5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMTRNR2L5
Genetic Testing Registry MTRNR2L5
NextProtP0CJ72 [Medical]
TSGene100463289
GENETestsMTRNR2L5
Huge Navigator MTRNR2L5 [HugePedia]
snp3D : Map Gene to Disease100463289
BioCentury BCIQMTRNR2L5
ClinGenMTRNR2L5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100463289
Chemical/Pharm GKB GenePA165548889
Clinical trialMTRNR2L5
Miscellaneous
canSAR (ICR)MTRNR2L5 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTRNR2L5
EVEXMTRNR2L5
GoPubMedMTRNR2L5
iHOPMTRNR2L5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:08 CET 2017

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