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MTRNR2L9 (MT-RNR2-like 9)

Identity

Alias_namesMT-RNR2-like 9 (pseudogene)
Other aliasHN9
HGNC (Hugo) MTRNR2L9
LocusID (NCBI) 100463487
Atlas_Id 70575
Location 6q11.1  [Link to chromosome band 6q11]
Location_base_pair Starts at 61574103 and ends at 61574629 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNA28S5 () / MTRNR2L9 (6q11.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTRNR2L9   37166
Cards
Entrez_Gene (NCBI)MTRNR2L9  100463487  MT-RNR2-like 9
AliasesHN9
GeneCards (Weizmann)MTRNR2L9
Ensembl hg19 (Hinxton)ENSG00000255633 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255633 [Gene_View]  ENSG00000255633 [Sequence]  chr6:61574103-61574629 [Contig_View]  MTRNR2L9 [Vega]
ICGC DataPortalENSG00000255633
TCGA cBioPortalMTRNR2L9
AceView (NCBI)MTRNR2L9
Genatlas (Paris)MTRNR2L9
WikiGenes100463487
SOURCE (Princeton)MTRNR2L9
Genetics Home Reference (NIH)MTRNR2L9
Genomic and cartography
GoldenPath hg38 (UCSC)MTRNR2L9  -     chr6:61574103-61574629 +  6q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MTRNR2L9  -     6q11.1   [Description]    (hg19-Feb_2009)
EnsemblMTRNR2L9 - 6q11.1 [CytoView hg19]  MTRNR2L9 - 6q11.1 [CytoView hg38]
Mapping of homologs : NCBIMTRNR2L9 [Mapview hg19]  MTRNR2L9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001190706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MTRNR2L9
Alternative Splicing GalleryENSG00000255633
Gene ExpressionMTRNR2L9 [ NCBI-GEO ]   MTRNR2L9 [ EBI - ARRAY_EXPRESS ]   MTRNR2L9 [ SEEK ]   MTRNR2L9 [ MEM ]
Gene Expression Viewer (FireBrowse)MTRNR2L9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100463487
GTEX Portal (Tissue expression)MTRNR2L9
Human Protein AtlasENSG00000255633-MTRNR2L9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CJ76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CJ76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CJ76
Splice isoforms : SwissVarP0CJ76
PhosPhoSitePlusP0CJ76
Domains : Interpro (EBI)Humanin   
Domain families : Pfam (Sanger)Humanin (PF15040)   
Domain families : Pfam (NCBI)pfam15040   
Conserved Domain (NCBI)MTRNR2L9
DMDM Disease mutations100463487
Blocks (Seattle)MTRNR2L9
SuperfamilyP0CJ76
Human Protein Atlas [tissue]ENSG00000255633-MTRNR2L9 [tissue]
Peptide AtlasP0CJ76
IPIIPI00974567   
Protein Interaction databases
DIP (DOE-UCLA)P0CJ76
IntAct (EBI)P0CJ76
FunCoupENSG00000255633
BioGRIDMTRNR2L9
STRING (EMBL)MTRNR2L9
ZODIACMTRNR2L9
Ontologies - Pathways
QuickGOP0CJ76
Ontology : AmiGOextracellular region  cytoplasm  
Ontology : EGO-EBIextracellular region  cytoplasm  
NDEx NetworkMTRNR2L9
Atlas of Cancer Signalling NetworkMTRNR2L9
Wikipedia pathwaysMTRNR2L9
Orthology - Evolution
OrthoDB100463487
GeneTree (enSembl)ENSG00000255633
Phylogenetic Trees/Animal Genes : TreeFamMTRNR2L9
HOVERGENP0CJ76
HOGENOMP0CJ76
Homologs : HomoloGeneMTRNR2L9
Homology/Alignments : Family Browser (UCSC)MTRNR2L9
Gene fusions - Rearrangements
Fusion : QuiverMTRNR2L9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTRNR2L9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTRNR2L9
dbVarMTRNR2L9
ClinVarMTRNR2L9
1000_GenomesMTRNR2L9 
Exome Variant ServerMTRNR2L9
ExAC (Exome Aggregation Consortium)ENSG00000255633
GNOMAD BrowserENSG00000255633
Varsome BrowserMTRNR2L9
Genetic variants : HAPMAP100463487
Genomic Variants (DGV)MTRNR2L9 [DGVbeta]
DECIPHERMTRNR2L9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMTRNR2L9 
Mutations
ICGC Data PortalMTRNR2L9 
TCGA Data PortalMTRNR2L9 
Broad Tumor PortalMTRNR2L9
OASIS PortalMTRNR2L9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMTRNR2L9
BioMutasearch MTRNR2L9
DgiDB (Drug Gene Interaction Database)MTRNR2L9
DoCM (Curated mutations)MTRNR2L9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTRNR2L9 (select a term)
intoGenMTRNR2L9
Cancer3DMTRNR2L9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMTRNR2L9
MedgenMTRNR2L9
Genetic Testing Registry MTRNR2L9
NextProtP0CJ76 [Medical]
TSGene100463487
GENETestsMTRNR2L9
Target ValidationMTRNR2L9
Huge Navigator MTRNR2L9 [HugePedia]
snp3D : Map Gene to Disease100463487
BioCentury BCIQMTRNR2L9
ClinGenMTRNR2L9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100463487
Chemical/Pharm GKB GenePA165618129
Clinical trialMTRNR2L9
Miscellaneous
canSAR (ICR)MTRNR2L9 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTRNR2L9
EVEXMTRNR2L9
GoPubMedMTRNR2L9
iHOPMTRNR2L9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 14:19:01 CEST 2018

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