Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MTX1 (metaxin 1)

Identity

Alias_namesMTX
Alias_symbol (synonym)MTXN
Other alias
HGNC (Hugo) MTX1
LocusID (NCBI) 4580
Atlas_Id 70578
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155208699 and ends at 155213839 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTX1   7504
Cards
Entrez_Gene (NCBI)MTX1  4580  metaxin 1
AliasesMTX; MTXN
GeneCards (Weizmann)MTX1
Ensembl hg19 (Hinxton)ENSG00000173171 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173171 [Gene_View]  chr1:155208699-155213839 [Contig_View]  MTX1 [Vega]
ICGC DataPortalENSG00000173171
TCGA cBioPortalMTX1
AceView (NCBI)MTX1
Genatlas (Paris)MTX1
WikiGenes4580
SOURCE (Princeton)MTX1
Genetics Home Reference (NIH)MTX1
Genomic and cartography
GoldenPath hg38 (UCSC)MTX1  -     chr1:155208699-155213839 +  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MTX1  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblMTX1 - 1q22 [CytoView hg19]  MTX1 - 1q22 [CytoView hg38]
Mapping of homologs : NCBIMTX1 [Mapview hg19]  MTX1 [Mapview hg38]
OMIM600605   
Gene and transcription
Genbank (Entrez)AI241389 AK313863 AX775989 BC001906 BC035616
RefSeq transcript (Entrez)NM_002455 NM_198883
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MTX1
Cluster EST : UnigeneHs.490874 [ NCBI ]
CGAP (NCI)Hs.490874
Alternative Splicing GalleryENSG00000173171
Gene ExpressionMTX1 [ NCBI-GEO ]   MTX1 [ EBI - ARRAY_EXPRESS ]   MTX1 [ SEEK ]   MTX1 [ MEM ]
Gene Expression Viewer (FireBrowse)MTX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4580
GTEX Portal (Tissue expression)MTX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13505   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13505  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13505
Splice isoforms : SwissVarQ13505
PhosPhoSitePlusQ13505
Domains : Interpro (EBI)Glutathione-S-Trfase_C-like    Metaxin_GST    Sam37/metaxin_N   
Domain families : Pfam (Sanger)GST_C_6 (PF17171)    Tom37 (PF10568)   
Domain families : Pfam (NCBI)pfam17171    pfam10568   
Conserved Domain (NCBI)MTX1
DMDM Disease mutations4580
Blocks (Seattle)MTX1
SuperfamilyQ13505
Human Protein AtlasENSG00000173171
Peptide AtlasQ13505
HPRD11861
IPIIPI00013678   IPI00394889   IPI00914855   IPI00760637   
Protein Interaction databases
DIP (DOE-UCLA)Q13505
IntAct (EBI)Q13505
FunCoupENSG00000173171
BioGRIDMTX1
STRING (EMBL)MTX1
ZODIACMTX1
Ontologies - Pathways
QuickGOQ13505
Ontology : AmiGOmitochondrial outer membrane  protein targeting to mitochondrion  integral component of membrane  
Ontology : EGO-EBImitochondrial outer membrane  protein targeting to mitochondrion  integral component of membrane  
NDEx NetworkMTX1
Atlas of Cancer Signalling NetworkMTX1
Wikipedia pathwaysMTX1
Orthology - Evolution
OrthoDB4580
GeneTree (enSembl)ENSG00000173171
Phylogenetic Trees/Animal Genes : TreeFamMTX1
HOVERGENQ13505
HOGENOMQ13505
Homologs : HomoloGeneMTX1
Homology/Alignments : Family Browser (UCSC)MTX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTX1
dbVarMTX1
ClinVarMTX1
1000_GenomesMTX1 
Exome Variant ServerMTX1
ExAC (Exome Aggregation Consortium)MTX1 (select the gene name)
Genetic variants : HAPMAP4580
Genomic Variants (DGV)MTX1 [DGVbeta]
DECIPHERMTX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMTX1 
Mutations
ICGC Data PortalMTX1 
TCGA Data PortalMTX1 
Broad Tumor PortalMTX1
OASIS PortalMTX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MTX1
DgiDB (Drug Gene Interaction Database)MTX1
DoCM (Curated mutations)MTX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTX1 (select a term)
intoGenMTX1
Cancer3DMTX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600605   
Orphanet
MedgenMTX1
Genetic Testing Registry MTX1
NextProtQ13505 [Medical]
TSGene4580
GENETestsMTX1
Target ValidationMTX1
Huge Navigator MTX1 [HugePedia]
snp3D : Map Gene to Disease4580
BioCentury BCIQMTX1
ClinGenMTX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4580
Chemical/Pharm GKB GenePA31306
Clinical trialMTX1
Miscellaneous
canSAR (ICR)MTX1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTX1
EVEXMTX1
GoPubMedMTX1
iHOPMTX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:31:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.