Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MTX3 (metaxin 3)

Identity

Other alias-
HGNC (Hugo) MTX3
LocusID (NCBI) 345778
Atlas_Id 70580
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 79272539 and ends at 79287088 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MTX3 (5q14.1) / MTX3 (5q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MTX3   24812
Cards
Entrez_Gene (NCBI)MTX3  345778  metaxin 3
Aliases
GeneCards (Weizmann)MTX3
Ensembl hg19 (Hinxton) [Gene_View]  chr5:79272539-79287088 [Contig_View]  MTX3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:79272539-79287088 [Contig_View]  MTX3 [Vega]
TCGA cBioPortalMTX3
AceView (NCBI)MTX3
Genatlas (Paris)MTX3
WikiGenes345778
SOURCE (Princeton)MTX3
Genetics Home Reference (NIH)MTX3
Genomic and cartography
GoldenPath hg19 (UCSC)MTX3  -     chr5:79272539-79287088 -  5q14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MTX3  -     5q14.1   [Description]    (hg38-Dec_2013)
EnsemblMTX3 - 5q14.1 [CytoView hg19]  MTX3 - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBIMTX3 [Mapview hg19]  MTX3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091375 AK296864 AW957034 BC035085 BC150295
RefSeq transcript (Entrez)NM_001010891 NM_001167741
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)MTX3
Cluster EST : UnigeneHs.531418 [ NCBI ]
CGAP (NCI)Hs.531418
Gene ExpressionMTX3 [ NCBI-GEO ]   MTX3 [ EBI - ARRAY_EXPRESS ]   MTX3 [ SEEK ]   MTX3 [ MEM ]
Gene Expression Viewer (FireBrowse)MTX3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)345778
GTEX Portal (Tissue expression)MTX3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5HYI7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5HYI7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5HYI7
Splice isoforms : SwissVarQ5HYI7
PhosPhoSitePlusQ5HYI7
Domains : Interpro (EBI)Glutathione-S-Trfase_C-like    GST_C    Metaxin    Sam37/metaxin   
Domain families : Pfam (Sanger)GST_C_3 (PF14497)    Tom37 (PF10568)    Tom37_C (PF11801)   
Domain families : Pfam (NCBI)pfam14497    pfam10568    pfam11801   
Conserved Domain (NCBI)MTX3
DMDM Disease mutations345778
Blocks (Seattle)MTX3
SuperfamilyQ5HYI7
Peptide AtlasQ5HYI7
HPRD17614
IPIIPI00646857   IPI00894211   IPI00916755   IPI00964600   IPI00939186   IPI00963862   
Protein Interaction databases
DIP (DOE-UCLA)Q5HYI7
IntAct (EBI)Q5HYI7
BioGRIDMTX3
STRING (EMBL)MTX3
ZODIACMTX3
Ontologies - Pathways
QuickGOQ5HYI7
Ontology : AmiGOmitochondrial outer membrane  protein targeting to mitochondrion  
Ontology : EGO-EBImitochondrial outer membrane  protein targeting to mitochondrion  
NDEx NetworkMTX3
Atlas of Cancer Signalling NetworkMTX3
Wikipedia pathwaysMTX3
Orthology - Evolution
OrthoDB345778
Phylogenetic Trees/Animal Genes : TreeFamMTX3
HOVERGENQ5HYI7
HOGENOMQ5HYI7
Homologs : HomoloGeneMTX3
Homology/Alignments : Family Browser (UCSC)MTX3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMTX3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MTX3
dbVarMTX3
ClinVarMTX3
1000_GenomesMTX3 
Exome Variant ServerMTX3
ExAC (Exome Aggregation Consortium)MTX3 (select the gene name)
Genetic variants : HAPMAP345778
Genomic Variants (DGV)MTX3 [DGVbeta]
DECIPHER (Syndromes)5:79272539-79287088  
CONAN: Copy Number AnalysisMTX3 
Mutations
ICGC Data PortalMTX3 
TCGA Data PortalMTX3 
Broad Tumor PortalMTX3
OASIS PortalMTX3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMTX3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMTX3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MTX3
DgiDB (Drug Gene Interaction Database)MTX3
DoCM (Curated mutations)MTX3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MTX3 (select a term)
intoGenMTX3
Cancer3DMTX3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMTX3
Genetic Testing Registry MTX3
NextProtQ5HYI7 [Medical]
TSGene345778
GENETestsMTX3
Huge Navigator MTX3 [HugePedia]
snp3D : Map Gene to Disease345778
BioCentury BCIQMTX3
ClinGenMTX3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD345778
Chemical/Pharm GKB GenePA134924631
Clinical trialMTX3
Miscellaneous
canSAR (ICR)MTX3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMTX3
EVEXMTX3
GoPubMedMTX3
iHOPMTX3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:34:10 CET 2017

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