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MUC12 (mucin 12, cell surface associated)

Identity

Alias_namesMUC11
mucin 11
Other aliasMUC-11
MUC-12
HGNC (Hugo) MUC12
LocusID (NCBI) 10071
Atlas_Id 70581
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100969623 and ends at 101018949 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FLNB (3p14.3) / MUC12 (7q22.1)SYNE2 (14q23.2) / MUC12 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MUC12   7510
Cards
Entrez_Gene (NCBI)MUC12  10071  mucin 12, cell surface associated
AliasesMUC-11; MUC-12; MUC11
GeneCards (Weizmann)MUC12
Ensembl hg19 (Hinxton)ENSG00000205277 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205277 [Gene_View]  chr7:100969623-101018949 [Contig_View]  MUC12 [Vega]
ICGC DataPortalENSG00000205277
TCGA cBioPortalMUC12
AceView (NCBI)MUC12
Genatlas (Paris)MUC12
WikiGenes10071
SOURCE (Princeton)MUC12
Genetics Home Reference (NIH)MUC12
Genomic and cartography
GoldenPath hg38 (UCSC)MUC12  -     chr7:100969623-101018949 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MUC12  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblMUC12 - 7q22.1 [CytoView hg19]  MUC12 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIMUC12 [Mapview hg19]  MUC12 [Mapview hg38]
OMIM604609   
Gene and transcription
Genbank (Entrez)AF147790 AF147791 AK024856 AK025404 AK296627
RefSeq transcript (Entrez)NM_001164462
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MUC12
Cluster EST : UnigeneHs.489355 [ NCBI ]
CGAP (NCI)Hs.489355
Alternative Splicing GalleryENSG00000205277
Gene ExpressionMUC12 [ NCBI-GEO ]   MUC12 [ EBI - ARRAY_EXPRESS ]   MUC12 [ SEEK ]   MUC12 [ MEM ]
Gene Expression Viewer (FireBrowse)MUC12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10071
GTEX Portal (Tissue expression)MUC12
Human Protein AtlasENSG00000205277-MUC12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKN1
Splice isoforms : SwissVarQ9UKN1
PhosPhoSitePlusQ9UKN1
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    SEA (PS50024)   
Domains : Interpro (EBI)EGF-like_CS    SEA_dom   
Domain families : Pfam (Sanger)SEA (PF01390)   
Domain families : Pfam (NCBI)pfam01390   
Conserved Domain (NCBI)MUC12
DMDM Disease mutations10071
Blocks (Seattle)MUC12
SuperfamilyQ9UKN1
Human Protein Atlas [tissue]ENSG00000205277-MUC12 [tissue]
Peptide AtlasQ9UKN1
IPIIPI00455957   IPI01010204   IPI00925889   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKN1
IntAct (EBI)Q9UKN1
FunCoupENSG00000205277
BioGRIDMUC12
STRING (EMBL)MUC12
ZODIACMUC12
Ontologies - Pathways
QuickGOQ9UKN1
Ontology : AmiGOregulation of cell growth  stimulatory C-type lectin receptor signaling pathway  molecular_function  Golgi lumen  plasma membrane  integral component of plasma membrane  O-glycan processing  
Ontology : EGO-EBIregulation of cell growth  stimulatory C-type lectin receptor signaling pathway  molecular_function  Golgi lumen  plasma membrane  integral component of plasma membrane  O-glycan processing  
NDEx NetworkMUC12
Atlas of Cancer Signalling NetworkMUC12
Wikipedia pathwaysMUC12
Orthology - Evolution
OrthoDB10071
GeneTree (enSembl)ENSG00000205277
Phylogenetic Trees/Animal Genes : TreeFamMUC12
HOVERGENQ9UKN1
HOGENOMQ9UKN1
Homologs : HomoloGeneMUC12
Homology/Alignments : Family Browser (UCSC)MUC12
Gene fusions - Rearrangements
Fusion: Tumor Portal MUC12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMUC12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MUC12
dbVarMUC12
ClinVarMUC12
1000_GenomesMUC12 
Exome Variant ServerMUC12
ExAC (Exome Aggregation Consortium)ENSG00000205277
GNOMAD BrowserENSG00000205277
Genetic variants : HAPMAP10071
Genomic Variants (DGV)MUC12 [DGVbeta]
DECIPHERMUC12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMUC12 
Mutations
ICGC Data PortalMUC12 
TCGA Data PortalMUC12 
Broad Tumor PortalMUC12
OASIS PortalMUC12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMUC12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMUC12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MUC12
DgiDB (Drug Gene Interaction Database)MUC12
DoCM (Curated mutations)MUC12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MUC12 (select a term)
intoGenMUC12
Cancer3DMUC12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604609   
Orphanet
MedgenMUC12
Genetic Testing Registry MUC12
NextProtQ9UKN1 [Medical]
TSGene10071
GENETestsMUC12
Target ValidationMUC12
Huge Navigator MUC12 [HugePedia]
snp3D : Map Gene to Disease10071
BioCentury BCIQMUC12
ClinGenMUC12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10071
Chemical/Pharm GKB GenePA31311
Clinical trialMUC12
Miscellaneous
canSAR (ICR)MUC12 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMUC12
EVEXMUC12
GoPubMedMUC12
iHOPMUC12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:18:15 CET 2017

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