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MUC20 (mucin 20, cell surface associated)

Identity

Alias_symbol (synonym)FLJ14408
KIAA1359
Other aliasMUC-20
HGNC (Hugo) MUC20
LocusID (NCBI) 200958
Atlas_Id 53678
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 195447753 and ends at 195460424 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MUC20   23282
Cards
Entrez_Gene (NCBI)MUC20  200958  mucin 20, cell surface associated
AliasesMUC-20
GeneCards (Weizmann)MUC20
Ensembl hg19 (Hinxton)ENSG00000176945 [Gene_View]  chr3:195447753-195460424 [Contig_View]  MUC20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176945 [Gene_View]  chr3:195447753-195460424 [Contig_View]  MUC20 [Vega]
ICGC DataPortalENSG00000176945
TCGA cBioPortalMUC20
AceView (NCBI)MUC20
Genatlas (Paris)MUC20
WikiGenes200958
SOURCE (Princeton)MUC20
Genetics Home Reference (NIH)MUC20
Genomic and cartography
GoldenPath hg19 (UCSC)MUC20  -     chr3:195447753-195460424 +  3q29   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MUC20  -     3q29   [Description]    (hg38-Dec_2013)
EnsemblMUC20 - 3q29 [CytoView hg19]  MUC20 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIMUC20 [Mapview hg19]  MUC20 [Mapview hg38]
OMIM610360   
Gene and transcription
Genbank (Entrez)AB037780 AB098731 AK027314 AK075138 AK298316
RefSeq transcript (Entrez)NM_001098516 NM_001282506 NM_001291833 NM_020790 NM_152673
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_033877 NT_005612 NT_187532 NT_187649 NT_187678 NT_187688 NT_187689 NT_187690 NT_187691 NW_004929312
Consensus coding sequences : CCDS (NCBI)MUC20
Cluster EST : UnigeneHs.308992 [ NCBI ]
CGAP (NCI)Hs.308992
Alternative Splicing GalleryENSG00000176945
Gene ExpressionMUC20 [ NCBI-GEO ]   MUC20 [ EBI - ARRAY_EXPRESS ]   MUC20 [ SEEK ]   MUC20 [ MEM ]
Gene Expression Viewer (FireBrowse)MUC20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200958
GTEX Portal (Tissue expression)MUC20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N307   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N307  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N307
Splice isoforms : SwissVarQ8N307
PhosPhoSitePlusQ8N307
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MUC20
DMDM Disease mutations200958
Blocks (Seattle)MUC20
SuperfamilyQ8N307
Human Protein AtlasENSG00000176945
Peptide AtlasQ8N307
HPRD17615
IPIIPI00885179   IPI00002234   IPI00952986   IPI00166450   IPI00926636   IPI00927068   
Protein Interaction databases
DIP (DOE-UCLA)Q8N307
IntAct (EBI)Q8N307
FunCoupENSG00000176945
BioGRIDMUC20
STRING (EMBL)MUC20
ZODIACMUC20
Ontologies - Pathways
QuickGOQ8N307
Ontology : AmiGOactivation of MAPK activity  extracellular region  Golgi lumen  basal plasma membrane  O-glycan processing  apical plasma membrane  microvillus membrane  hepatocyte growth factor receptor signaling pathway  protein homooligomerization  
Ontology : EGO-EBIactivation of MAPK activity  extracellular region  Golgi lumen  basal plasma membrane  O-glycan processing  apical plasma membrane  microvillus membrane  hepatocyte growth factor receptor signaling pathway  protein homooligomerization  
NDEx NetworkMUC20
Atlas of Cancer Signalling NetworkMUC20
Wikipedia pathwaysMUC20
Orthology - Evolution
OrthoDB200958
GeneTree (enSembl)ENSG00000176945
Phylogenetic Trees/Animal Genes : TreeFamMUC20
HOVERGENQ8N307
HOGENOMQ8N307
Homologs : HomoloGeneMUC20
Homology/Alignments : Family Browser (UCSC)MUC20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMUC20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MUC20
dbVarMUC20
ClinVarMUC20
1000_GenomesMUC20 
Exome Variant ServerMUC20
ExAC (Exome Aggregation Consortium)MUC20 (select the gene name)
Genetic variants : HAPMAP200958
Genomic Variants (DGV)MUC20 [DGVbeta]
DECIPHER (Syndromes)3:195447753-195460424  ENSG00000176945
CONAN: Copy Number AnalysisMUC20 
Mutations
ICGC Data PortalMUC20 
TCGA Data PortalMUC20 
Broad Tumor PortalMUC20
OASIS PortalMUC20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMUC20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMUC20
intOGen PortalMUC20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MUC20
DgiDB (Drug Gene Interaction Database)MUC20
DoCM (Curated mutations)MUC20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MUC20 (select a term)
intoGenMUC20
Cancer3DMUC20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610360   
Orphanet
MedgenMUC20
Genetic Testing Registry MUC20
NextProtQ8N307 [Medical]
TSGene200958
GENETestsMUC20
Huge Navigator MUC20 [HugePedia]
snp3D : Map Gene to Disease200958
BioCentury BCIQMUC20
ClinGenMUC20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200958
Chemical/Pharm GKB GenePA134939730
Clinical trialMUC20
Miscellaneous
canSAR (ICR)MUC20 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMUC20
EVEXMUC20
GoPubMedMUC20
iHOPMUC20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:17:41 CET 2017

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