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MUC22 (mucin 22)

Identity

Alias_symbol (synonym)PBMUCL1
Other alias
HGNC (Hugo) MUC22
LocusID (NCBI) 100507679
Atlas_Id 70582
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31005952 and ends at 31035402 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MUC22   39755
Cards
Entrez_Gene (NCBI)MUC22  100507679  mucin 22
AliasesPBMUCL1
GeneCards (Weizmann)MUC22
Ensembl hg19 (Hinxton)ENSG00000261272 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261272 [Gene_View]  ENSG00000261272 [Sequence]  chr6:31005952-31035402 [Contig_View]  MUC22 [Vega]
ICGC DataPortalENSG00000261272
TCGA cBioPortalMUC22
AceView (NCBI)MUC22
Genatlas (Paris)MUC22
WikiGenes100507679
SOURCE (Princeton)MUC22
Genetics Home Reference (NIH)MUC22
Genomic and cartography
GoldenPath hg38 (UCSC)MUC22  -     chr6:31005952-31035402 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MUC22  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblMUC22 - 6p21.33 [CytoView hg19]  MUC22 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIMUC22 [Mapview hg19]  MUC22 [Mapview hg38]
OMIM613917   
Gene and transcription
Genbank (Entrez)AB560770 AB600271 AB600272 CV572205
RefSeq transcript (Entrez)NM_001198815 NM_001318484 NM_001322469
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)MUC22
Cluster EST : UnigeneHs.582967 [ NCBI ]
CGAP (NCI)Hs.582967
Alternative Splicing GalleryENSG00000261272
Gene ExpressionMUC22 [ NCBI-GEO ]   MUC22 [ EBI - ARRAY_EXPRESS ]   MUC22 [ SEEK ]   MUC22 [ MEM ]
Gene Expression Viewer (FireBrowse)MUC22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507679
GTEX Portal (Tissue expression)MUC22
Human Protein AtlasENSG00000261272-MUC22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtE2RYF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE2RYF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE2RYF6
Splice isoforms : SwissVarE2RYF6
PhosPhoSitePlusE2RYF6
Domains : Interpro (EBI)Mucin_dom   
Domain families : Pfam (Sanger)Epiglycanin_C (PF14654)   
Domain families : Pfam (NCBI)pfam14654   
Conserved Domain (NCBI)MUC22
DMDM Disease mutations100507679
Blocks (Seattle)MUC22
SuperfamilyE2RYF6
Human Protein Atlas [tissue]ENSG00000261272-MUC22 [tissue]
Peptide AtlasE2RYF6
IPIIPI00973595   
Protein Interaction databases
DIP (DOE-UCLA)E2RYF6
IntAct (EBI)E2RYF6
FunCoupENSG00000261272
BioGRIDMUC22
STRING (EMBL)MUC22
ZODIACMUC22
Ontologies - Pathways
QuickGOE2RYF6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMUC22
Atlas of Cancer Signalling NetworkMUC22
Wikipedia pathwaysMUC22
Orthology - Evolution
OrthoDB100507679
GeneTree (enSembl)ENSG00000261272
Phylogenetic Trees/Animal Genes : TreeFamMUC22
HOVERGENE2RYF6
HOGENOME2RYF6
Homologs : HomoloGeneMUC22
Homology/Alignments : Family Browser (UCSC)MUC22
Gene fusions - Rearrangements
Fusion : QuiverMUC22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMUC22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MUC22
dbVarMUC22
ClinVarMUC22
1000_GenomesMUC22 
Exome Variant ServerMUC22
ExAC (Exome Aggregation Consortium)ENSG00000261272
GNOMAD BrowserENSG00000261272
Varsome BrowserMUC22
Genetic variants : HAPMAP100507679
Genomic Variants (DGV)MUC22 [DGVbeta]
DECIPHERMUC22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMUC22 
Mutations
ICGC Data PortalMUC22 
TCGA Data PortalMUC22 
Broad Tumor PortalMUC22
OASIS PortalMUC22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMUC22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMUC22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MUC22
DgiDB (Drug Gene Interaction Database)MUC22
DoCM (Curated mutations)MUC22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MUC22 (select a term)
intoGenMUC22
Cancer3DMUC22(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613917   
Orphanet
DisGeNETMUC22
MedgenMUC22
Genetic Testing Registry MUC22
NextProtE2RYF6 [Medical]
TSGene100507679
GENETestsMUC22
Target ValidationMUC22
Huge Navigator MUC22 [HugePedia]
snp3D : Map Gene to Disease100507679
BioCentury BCIQMUC22
ClinGenMUC22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507679
Chemical/Pharm GKB GenePA166049041
Clinical trialMUC22
Miscellaneous
canSAR (ICR)MUC22 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMUC22
EVEXMUC22
GoPubMedMUC22
iHOPMUC22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:19:02 CEST 2018

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