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MUC3A (mucin 3A, cell surface associated)

Identity

Alias_namesMUC3
mucin 3A
Other aliasMUC-3A
HGNC (Hugo) MUC3A
LocusID (NCBI) 4584
Atlas_Id 41458
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100949420 and ends at 100968346 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LOC100287944 (12q23.3) / MUC3A (7q22.1)MUC3A (7q22.1) / IL32 (16p13.3)MUC3A (7q22.1) / MUC3A (7q22.1)
MUC3A (7q22.1) / SET (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MUC3A   7513
Cards
Entrez_Gene (NCBI)MUC3A  4584  mucin 3A, cell surface associated
AliasesMUC-3A; MUC3
GeneCards (Weizmann)MUC3A
Ensembl hg19 (Hinxton)ENSG00000169894 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169894 [Gene_View]  chr7:100949420-100968346 [Contig_View]  MUC3A [Vega]
ICGC DataPortalENSG00000169894
TCGA cBioPortalMUC3A
AceView (NCBI)MUC3A
Genatlas (Paris)MUC3A
WikiGenes4584
SOURCE (Princeton)MUC3A
Genetics Home Reference (NIH)MUC3A
Genomic and cartography
GoldenPath hg38 (UCSC)MUC3A  -     chr7:100949420-100968346 +  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MUC3A  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblMUC3A - 7q22.1 [CytoView hg19]  MUC3A - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIMUC3A [Mapview hg19]  MUC3A [Mapview hg38]
OMIM158371   
Gene and transcription
Genbank (Entrez)AB038784 AF007190 AF007193 AF007194 AF143371
RefSeq transcript (Entrez)NM_005960
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MUC3A
Cluster EST : UnigeneHs.744530 [ NCBI ]
CGAP (NCI)Hs.744530
Alternative Splicing GalleryENSG00000169894
Gene ExpressionMUC3A [ NCBI-GEO ]   MUC3A [ EBI - ARRAY_EXPRESS ]   MUC3A [ SEEK ]   MUC3A [ MEM ]
Gene Expression Viewer (FireBrowse)MUC3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4584
GTEX Portal (Tissue expression)MUC3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02505   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02505  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02505
Splice isoforms : SwissVarQ02505
PhosPhoSitePlusQ02505
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    SEA (PS50024)   
Domains : Interpro (EBI)EGF-like_CS    EGF-like_dom    SEA_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)EGF (SM00181)  SEA (SM00200)  
Conserved Domain (NCBI)MUC3A
DMDM Disease mutations4584
Blocks (Seattle)MUC3A
SuperfamilyQ02505
Human Protein AtlasENSG00000169894
Peptide AtlasQ02505
IPIIPI00828130   IPI00386766   IPI00827822   IPI00827769   IPI00827926   
Protein Interaction databases
DIP (DOE-UCLA)Q02505
IntAct (EBI)Q02505
FunCoupENSG00000169894
BioGRIDMUC3A
STRING (EMBL)MUC3A
ZODIACMUC3A
Ontologies - Pathways
QuickGOQ02505
Ontology : AmiGOstimulatory C-type lectin receptor signaling pathway  extracellular matrix structural constituent  extracellular region  Golgi lumen  plasma membrane  integral component of membrane  O-glycan processing  extracellular matrix constituent, lubricant activity  
Ontology : EGO-EBIstimulatory C-type lectin receptor signaling pathway  extracellular matrix structural constituent  extracellular region  Golgi lumen  plasma membrane  integral component of membrane  O-glycan processing  extracellular matrix constituent, lubricant activity  
NDEx NetworkMUC3A
Atlas of Cancer Signalling NetworkMUC3A
Wikipedia pathwaysMUC3A
Orthology - Evolution
OrthoDB4584
GeneTree (enSembl)ENSG00000169894
Phylogenetic Trees/Animal Genes : TreeFamMUC3A
HOVERGENQ02505
HOGENOMQ02505
Homologs : HomoloGeneMUC3A
Homology/Alignments : Family Browser (UCSC)MUC3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMUC3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MUC3A
dbVarMUC3A
ClinVarMUC3A
1000_GenomesMUC3A 
Exome Variant ServerMUC3A
ExAC (Exome Aggregation Consortium)MUC3A (select the gene name)
Genetic variants : HAPMAP4584
Genomic Variants (DGV)MUC3A [DGVbeta]
DECIPHERMUC3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMUC3A 
Mutations
ICGC Data PortalMUC3A 
TCGA Data PortalMUC3A 
Broad Tumor PortalMUC3A
OASIS PortalMUC3A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMUC3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MUC3A
DgiDB (Drug Gene Interaction Database)MUC3A
DoCM (Curated mutations)MUC3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MUC3A (select a term)
intoGenMUC3A
Cancer3DMUC3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM158371   
Orphanet
MedgenMUC3A
Genetic Testing Registry MUC3A
NextProtQ02505 [Medical]
TSGene4584
GENETestsMUC3A
Target ValidationMUC3A
Huge Navigator MUC3A [HugePedia]
snp3D : Map Gene to Disease4584
BioCentury BCIQMUC3A
ClinGenMUC3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4584
Chemical/Pharm GKB GenePA31317
Clinical trialMUC3A
Miscellaneous
canSAR (ICR)MUC3A (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMUC3A
EVEXMUC3A
GoPubMedMUC3A
iHOPMUC3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:45:39 CEST 2017

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