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MUCL1 (mucin like 1)

Identity

Alias (NCBI)SBEM
HGNC (Hugo) MUCL1
HGNC Alias symbSBEM
HGNC Alias namesmall breast epithelial mucin
LocusID (NCBI) 118430
Atlas_Id 43848
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 54854516 and ends at 54858387 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CS (12q13.3) / MUCL1 (12q13.2)LARP4 (12q13.12) / MUCL1 (12q13.2)MAP4K4 (2q11.2) / MUCL1 (12q13.2)
MUCL1 (12q13.2) / CHI3L2 (1p13.3)RPL23 (17q12) / MUCL1 (12q13.2)SLC16A7 (12q14.1) / MUCL1 (12q13.2)
WHSC1L1 (8p11.23) / MUCL1 (12q13.2)CS 12q13.3 / MUCL1 12q13.2LARP4 12q13.12 / MUCL1 12q13.2
MAP4K4 2q11.2 / MUCL1 12q13.2MUCL1 12q13.2 / CHI3L2 1p13.3WHSC1L1 8p11.23 / MUCL1 12q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MUCL1   30588
Cards
Entrez_Gene (NCBI)MUCL1    mucin like 1
AliasesSBEM
GeneCards (Weizmann)MUCL1
Ensembl hg19 (Hinxton)ENSG00000172551 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172551 [Gene_View]  ENSG00000172551 [Sequence]  chr12:54854516-54858387 [Contig_View]  MUCL1 [Vega]
ICGC DataPortalENSG00000172551
TCGA cBioPortalMUCL1
AceView (NCBI)MUCL1
Genatlas (Paris)MUCL1
SOURCE (Princeton)MUCL1
Genetics Home Reference (NIH)MUCL1
Genomic and cartography
GoldenPath hg38 (UCSC)MUCL1  -     chr12:54854516-54858387 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MUCL1  -     12q13.2   [Description]    (hg19-Feb_2009)
GoldenPathMUCL1 - 12q13.2 [CytoView hg19]  MUCL1 - 12q13.2 [CytoView hg38]
ImmunoBaseENSG00000172551
Genome Data Viewer NCBIMUCL1 [Mapview hg19]  
OMIM610857   
Gene and transcription
Genbank (Entrez)AF414087 AI905624 AY359062 AY651259 BC111421
RefSeq transcript (Entrez)NM_058173
Consensus coding sequences : CCDS (NCBI)MUCL1
Gene ExpressionMUCL1 [ NCBI-GEO ]   MUCL1 [ EBI - ARRAY_EXPRESS ]   MUCL1 [ SEEK ]   MUCL1 [ MEM ]
Gene Expression Viewer (FireBrowse)MUCL1 [ Firebrowse - Broad ]
GenevisibleExpression of MUCL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118430
GTEX Portal (Tissue expression)MUCL1
Human Protein AtlasENSG00000172551-MUCL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DR8
PhosPhoSitePlusQ96DR8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MUCL1
SuperfamilyQ96DR8
AlphaFold pdb e-kbQ96DR8   
Human Protein Atlas [tissue]ENSG00000172551-MUCL1 [tissue]
HPRD17290
Protein Interaction databases
DIP (DOE-UCLA)Q96DR8
IntAct (EBI)Q96DR8
BioGRIDMUCL1
STRING (EMBL)MUCL1
ZODIACMUCL1
Ontologies - Pathways
QuickGOQ96DR8
Ontology : AmiGOstimulatory C-type lectin receptor signaling pathway  protein binding  extracellular region  Golgi lumen  plasma membrane  O-glycan processing  
Ontology : EGO-EBIstimulatory C-type lectin receptor signaling pathway  protein binding  extracellular region  Golgi lumen  plasma membrane  O-glycan processing  
NDEx NetworkMUCL1
Atlas of Cancer Signalling NetworkMUCL1
Wikipedia pathwaysMUCL1
Orthology - Evolution
OrthoDB118430
GeneTree (enSembl)ENSG00000172551
Phylogenetic Trees/Animal Genes : TreeFamMUCL1
Homologs : HomoloGeneMUCL1
Homology/Alignments : Family Browser (UCSC)MUCL1
Gene fusions - Rearrangements
Fusion : MitelmanCS/MUCL1 [12q13.3/12q13.2]  
Fusion : MitelmanLARP4/MUCL1 [12q13.12/12q13.2]  
Fusion : MitelmanMAP4K4/MUCL1 [2q11.2/12q13.2]  
Fusion : MitelmanMUCL1/CHI3L2 [12q13.2/1p13.3]  
Fusion : MitelmanRPL23/MUCL1 [17q12/12q13.2]  
Fusion : MitelmanSLC16A7/MUCL1 [12q14.1/12q13.2]  
Fusion : MitelmanWHSC1L1/MUCL1 [8p11.23/12q13.2]  
Fusion : QuiverMUCL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMUCL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MUCL1
dbVarMUCL1
ClinVarMUCL1
MonarchMUCL1
1000_GenomesMUCL1 
Exome Variant ServerMUCL1
GNOMAD BrowserENSG00000172551
Varsome BrowserMUCL1
ACMGMUCL1 variants
VarityQ96DR8
Genomic Variants (DGV)MUCL1 [DGVbeta]
DECIPHERMUCL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMUCL1 
Mutations
ICGC Data PortalMUCL1 
TCGA Data PortalMUCL1 
Broad Tumor PortalMUCL1
OASIS PortalMUCL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMUCL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMUCL1
Mutations and Diseases : HGMDMUCL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMUCL1
DgiDB (Drug Gene Interaction Database)MUCL1
DoCM (Curated mutations)MUCL1
CIViC (Clinical Interpretations of Variants in Cancer)MUCL1
Cancer3DMUCL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610857   
Orphanet
DisGeNETMUCL1
MedgenMUCL1
Genetic Testing Registry MUCL1
NextProtQ96DR8 [Medical]
GENETestsMUCL1
Target ValidationMUCL1
Huge Navigator MUCL1 [HugePedia]
ClinGenMUCL1
Clinical trials, drugs, therapy
MyCancerGenomeMUCL1
Protein Interactions : CTDMUCL1
Pharm GKB GenePA162396316
PharosQ96DR8
Clinical trialMUCL1
Miscellaneous
canSAR (ICR)MUCL1
HarmonizomeMUCL1
DataMed IndexMUCL1
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMUCL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:21:38 CEST 2021

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