Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MUCL1 (mucin like 1)

Identity

Alias_symbol (synonym)SBEM
Other alias
HGNC (Hugo) MUCL1
LocusID (NCBI) 118430
Atlas_Id 43848
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 54854515 and ends at 54858390 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CS (12q13.3) / MUCL1 (12q13.2)LARP4 (12q13.12) / MUCL1 (12q13.2)MAP4K4 (2q11.2) / MUCL1 (12q13.2)
MUCL1 (12q13.2) / CHI3L2 (1p13.3)RPL23 (17q12) / MUCL1 (12q13.2)SLC16A7 (12q14.1) / MUCL1 (12q13.2)
WHSC1L1 (8p11.23) / MUCL1 (12q13.2)CS 12q13.3 / MUCL1 12q13.2LARP4 12q13.12 / MUCL1 12q13.2
MAP4K4 2q11.2 / MUCL1 12q13.2MUCL1 12q13.2 / CHI3L2 1p13.3WHSC1L1 8p11.23 / MUCL1 12q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Adenocarcinoma


External links

Nomenclature
HGNC (Hugo)MUCL1   30588
Cards
Entrez_Gene (NCBI)MUCL1  118430  mucin like 1
AliasesSBEM
GeneCards (Weizmann)MUCL1
Ensembl hg19 (Hinxton)ENSG00000172551 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172551 [Gene_View]  chr12:54854515-54858390 [Contig_View]  MUCL1 [Vega]
ICGC DataPortalENSG00000172551
TCGA cBioPortalMUCL1
AceView (NCBI)MUCL1
Genatlas (Paris)MUCL1
WikiGenes118430
SOURCE (Princeton)MUCL1
Genetics Home Reference (NIH)MUCL1
Genomic and cartography
GoldenPath hg38 (UCSC)MUCL1  -     chr12:54854515-54858390 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MUCL1  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblMUCL1 - 12q13.2 [CytoView hg19]  MUCL1 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIMUCL1 [Mapview hg19]  MUCL1 [Mapview hg38]
OMIM610857   
Gene and transcription
Genbank (Entrez)AF414087 AI905624 AY359062 AY651259 BC111421
RefSeq transcript (Entrez)NM_058173
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MUCL1
Cluster EST : UnigeneHs.348419 [ NCBI ]
CGAP (NCI)Hs.348419
Alternative Splicing GalleryENSG00000172551
Gene ExpressionMUCL1 [ NCBI-GEO ]   MUCL1 [ EBI - ARRAY_EXPRESS ]   MUCL1 [ SEEK ]   MUCL1 [ MEM ]
Gene Expression Viewer (FireBrowse)MUCL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118430
GTEX Portal (Tissue expression)MUCL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DR8
Splice isoforms : SwissVarQ96DR8
PhosPhoSitePlusQ96DR8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MUCL1
DMDM Disease mutations118430
Blocks (Seattle)MUCL1
SuperfamilyQ96DR8
Human Protein AtlasENSG00000172551
Peptide AtlasQ96DR8
HPRD17290
IPIIPI00061116   IPI01022421   
Protein Interaction databases
DIP (DOE-UCLA)Q96DR8
IntAct (EBI)Q96DR8
FunCoupENSG00000172551
BioGRIDMUCL1
STRING (EMBL)MUCL1
ZODIACMUCL1
Ontologies - Pathways
QuickGOQ96DR8
Ontology : AmiGOstimulatory C-type lectin receptor signaling pathway  extracellular region  Golgi lumen  plasma membrane  O-glycan processing  
Ontology : EGO-EBIstimulatory C-type lectin receptor signaling pathway  extracellular region  Golgi lumen  plasma membrane  O-glycan processing  
NDEx NetworkMUCL1
Atlas of Cancer Signalling NetworkMUCL1
Wikipedia pathwaysMUCL1
Orthology - Evolution
OrthoDB118430
GeneTree (enSembl)ENSG00000172551
Phylogenetic Trees/Animal Genes : TreeFamMUCL1
HOVERGENQ96DR8
HOGENOMQ96DR8
Homologs : HomoloGeneMUCL1
Homology/Alignments : Family Browser (UCSC)MUCL1
Gene fusions - Rearrangements
Fusion : MitelmanCS/MUCL1 [12q13.3/12q13.2]  [t(12;12)(q13;q13)]  
Fusion : MitelmanLARP4/MUCL1 [12q13.12/12q13.2]  [t(12;12)(q13;q13)]  
Fusion : MitelmanMAP4K4/MUCL1 [2q11.2/12q13.2]  [t(2;12)(q11;q13)]  
Fusion : MitelmanMUCL1/CHI3L2 [12q13.2/1p13.3]  [t(1;12)(p13;q13)]  
Fusion : MitelmanRPL23/MUCL1 [17q12/12q13.2]  [t(12;17)(q13;q12)]  
Fusion : MitelmanSLC16A7/MUCL1 [12q14.1/12q13.2]  [t(12;12)(q13;q14)]  
Fusion : MitelmanWHSC1L1/MUCL1 [8p11.23/12q13.2]  [t(8;12)(p12;q13)]  
Fusion: TCGACS 12q13.3 MUCL1 12q13.2 HNSC
Fusion: TCGALARP4 12q13.12 MUCL1 12q13.2 LUAD
Fusion: TCGAMAP4K4 2q11.2 MUCL1 12q13.2 LUAD
Fusion: TCGAMUCL1 12q13.2 CHI3L2 1p13.3 BRCA
Fusion: TCGAWHSC1L1 8p11.23 MUCL1 12q13.2 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMUCL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MUCL1
dbVarMUCL1
ClinVarMUCL1
1000_GenomesMUCL1 
Exome Variant ServerMUCL1
ExAC (Exome Aggregation Consortium)MUCL1 (select the gene name)
Genetic variants : HAPMAP118430
Genomic Variants (DGV)MUCL1 [DGVbeta]
DECIPHERMUCL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMUCL1 
Mutations
ICGC Data PortalMUCL1 
TCGA Data PortalMUCL1 
Broad Tumor PortalMUCL1
OASIS PortalMUCL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMUCL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMUCL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MUCL1
DgiDB (Drug Gene Interaction Database)MUCL1
DoCM (Curated mutations)MUCL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MUCL1 (select a term)
intoGenMUCL1
Cancer3DMUCL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610857   
Orphanet
MedgenMUCL1
Genetic Testing Registry MUCL1
NextProtQ96DR8 [Medical]
TSGene118430
GENETestsMUCL1
Huge Navigator MUCL1 [HugePedia]
snp3D : Map Gene to Disease118430
BioCentury BCIQMUCL1
ClinGenMUCL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118430
Chemical/Pharm GKB GenePA162396316
Clinical trialMUCL1
Miscellaneous
canSAR (ICR)MUCL1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMUCL1
EVEXMUCL1
GoPubMedMUCL1
iHOPMUCL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:27:32 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.