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MURC (muscle related coiled-coil protein)

Identity

Alias_namesmuscle-related coiled-coil protein
Alias_symbol (synonym)cavin-4
CAVIN4
Other alias
HGNC (Hugo) MURC
LocusID (NCBI) 347273
Atlas_Id 50938
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 103340361 and ends at 103350669 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATP2A2 (12q24.11) / MURC (9q31.1)MSANTD3-TMEFF1 (9q31.1) / MURC (9q31.1)TMEFF1 (9q31.1) / MURC (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MURC   33742
LRG (Locus Reference Genomic)LRG_760
Cards
Entrez_Gene (NCBI)MURC  347273  muscle related coiled-coil protein
AliasesCAVIN4; cavin-4
GeneCards (Weizmann)MURC
Ensembl hg19 (Hinxton)ENSG00000170681 [Gene_View]  chr9:103340361-103350669 [Contig_View]  MURC [Vega]
Ensembl hg38 (Hinxton)ENSG00000170681 [Gene_View]  chr9:103340361-103350669 [Contig_View]  MURC [Vega]
ICGC DataPortalENSG00000170681
TCGA cBioPortalMURC
AceView (NCBI)MURC
Genatlas (Paris)MURC
WikiGenes347273
SOURCE (Princeton)MURC
Genetics Home Reference (NIH)MURC
Genomic and cartography
GoldenPath hg19 (UCSC)MURC  -     chr9:103340361-103350669 +  9q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MURC  -     9q31.1   [Description]    (hg38-Dec_2013)
EnsemblMURC - 9q31.1 [CytoView hg19]  MURC - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIMURC [Mapview hg19]  MURC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA192639 AA446953 AK128238 AK300099 BC090888
RefSeq transcript (Entrez)NM_001018116
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_033273 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)MURC
Cluster EST : UnigeneHs.733374 [ NCBI ]
CGAP (NCI)Hs.733374
Alternative Splicing GalleryENSG00000170681
Gene ExpressionMURC [ NCBI-GEO ]   MURC [ EBI - ARRAY_EXPRESS ]   MURC [ SEEK ]   MURC [ MEM ]
Gene Expression Viewer (FireBrowse)MURC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347273
GTEX Portal (Tissue expression)MURC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BKX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BKX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BKX8
Splice isoforms : SwissVarQ5BKX8
PhosPhoSitePlusQ5BKX8
Domains : Interpro (EBI)Cavin_fam   
Domain families : Pfam (Sanger)PTRF_SDPR (PF15237)   
Domain families : Pfam (NCBI)pfam15237   
Conserved Domain (NCBI)MURC
DMDM Disease mutations347273
Blocks (Seattle)MURC
SuperfamilyQ5BKX8
Human Protein AtlasENSG00000170681
Peptide AtlasQ5BKX8
HPRD18599
IPIIPI00249656   
Protein Interaction databases
DIP (DOE-UCLA)Q5BKX8
IntAct (EBI)Q5BKX8
FunCoupENSG00000170681
BioGRIDMURC
STRING (EMBL)MURC
ZODIACMURC
Ontologies - Pathways
QuickGOQ5BKX8
Ontology : AmiGOcytoplasm  transcription, DNA-templated  muscle organ development  regulation of gene expression  Z disc  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIcytoplasm  transcription, DNA-templated  muscle organ development  regulation of gene expression  Z disc  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkMURC
Atlas of Cancer Signalling NetworkMURC
Wikipedia pathwaysMURC
Orthology - Evolution
OrthoDB347273
GeneTree (enSembl)ENSG00000170681
Phylogenetic Trees/Animal Genes : TreeFamMURC
HOVERGENQ5BKX8
HOGENOMQ5BKX8
Homologs : HomoloGeneMURC
Homology/Alignments : Family Browser (UCSC)MURC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMURC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MURC
dbVarMURC
ClinVarMURC
1000_GenomesMURC 
Exome Variant ServerMURC
ExAC (Exome Aggregation Consortium)MURC (select the gene name)
Genetic variants : HAPMAP347273
Genomic Variants (DGV)MURC [DGVbeta]
DECIPHER (Syndromes)9:103340361-103350669  ENSG00000170681
CONAN: Copy Number AnalysisMURC 
Mutations
ICGC Data PortalMURC 
TCGA Data PortalMURC 
Broad Tumor PortalMURC
OASIS PortalMURC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMURC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMURC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MURC
DgiDB (Drug Gene Interaction Database)MURC
DoCM (Curated mutations)MURC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MURC (select a term)
intoGenMURC
Cancer3DMURC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMURC
Genetic Testing Registry MURC
NextProtQ5BKX8 [Medical]
TSGene347273
GENETestsMURC
Huge Navigator MURC [HugePedia]
snp3D : Map Gene to Disease347273
BioCentury BCIQMURC
ClinGenMURC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347273
Chemical/Pharm GKB GenePA164723237
Clinical trialMURC
Miscellaneous
canSAR (ICR)MURC (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMURC
EVEXMURC
GoPubMedMURC
iHOPMURC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:11:20 CEST 2017

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