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MXRA5 (matrix remodeling associated 5)

Identity

Alias_namesmatrix-remodelling associated 5
Alias_symbol (synonym)DKFZp564I1922
Other alias-
HGNC (Hugo) MXRA5
LocusID (NCBI) 25878
Atlas_Id 53663
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 3308566 and ends at 3346643 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MXRA5   7539
Cards
Entrez_Gene (NCBI)MXRA5  25878  matrix remodeling associated 5
Aliases
GeneCards (Weizmann)MXRA5
Ensembl hg19 (Hinxton)ENSG00000101825 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101825 [Gene_View]  chrX:3308566-3346643 [Contig_View]  MXRA5 [Vega]
ICGC DataPortalENSG00000101825
TCGA cBioPortalMXRA5
AceView (NCBI)MXRA5
Genatlas (Paris)MXRA5
WikiGenes25878
SOURCE (Princeton)MXRA5
Genetics Home Reference (NIH)MXRA5
Genomic and cartography
GoldenPath hg38 (UCSC)MXRA5  -     chrX:3308566-3346643 -  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MXRA5  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblMXRA5 - Xp22.33 [CytoView hg19]  MXRA5 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIMXRA5 [Mapview hg19]  MXRA5 [Mapview hg38]
OMIM300938   
Gene and transcription
Genbank (Entrez)AF245505 AL049946 BC011846 BC064986 BC080586
RefSeq transcript (Entrez)NM_015419
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MXRA5
Cluster EST : UnigeneHs.369422 [ NCBI ]
CGAP (NCI)Hs.369422
Alternative Splicing GalleryENSG00000101825
Gene ExpressionMXRA5 [ NCBI-GEO ]   MXRA5 [ EBI - ARRAY_EXPRESS ]   MXRA5 [ SEEK ]   MXRA5 [ MEM ]
Gene Expression Viewer (FireBrowse)MXRA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25878
GTEX Portal (Tissue expression)MXRA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NR99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NR99
Splice isoforms : SwissVarQ9NR99
PhosPhoSitePlusQ9NR99
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT   
Domain families : Pfam (Sanger)I-set (PF07679)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam07679    pfam13855   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)MXRA5
DMDM Disease mutations25878
Blocks (Seattle)MXRA5
SuperfamilyQ9NR99
Human Protein AtlasENSG00000101825
Peptide AtlasQ9NR99
HPRD06456
IPIIPI00012347   
Protein Interaction databases
DIP (DOE-UCLA)Q9NR99
IntAct (EBI)Q9NR99
FunCoupENSG00000101825
BioGRIDMXRA5
STRING (EMBL)MXRA5
ZODIACMXRA5
Ontologies - Pathways
QuickGOQ9NR99
Ontology : AmiGOmolecular_function  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  extracellular exosome  
NDEx NetworkMXRA5
Atlas of Cancer Signalling NetworkMXRA5
Wikipedia pathwaysMXRA5
Orthology - Evolution
OrthoDB25878
GeneTree (enSembl)ENSG00000101825
Phylogenetic Trees/Animal Genes : TreeFamMXRA5
HOVERGENQ9NR99
HOGENOMQ9NR99
Homologs : HomoloGeneMXRA5
Homology/Alignments : Family Browser (UCSC)MXRA5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMXRA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MXRA5
dbVarMXRA5
ClinVarMXRA5
1000_GenomesMXRA5 
Exome Variant ServerMXRA5
ExAC (Exome Aggregation Consortium)MXRA5 (select the gene name)
Genetic variants : HAPMAP25878
Genomic Variants (DGV)MXRA5 [DGVbeta]
DECIPHERMXRA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMXRA5 
Mutations
ICGC Data PortalMXRA5 
TCGA Data PortalMXRA5 
Broad Tumor PortalMXRA5
OASIS PortalMXRA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMXRA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMXRA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch MXRA5
DgiDB (Drug Gene Interaction Database)MXRA5
DoCM (Curated mutations)MXRA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MXRA5 (select a term)
intoGenMXRA5
Cancer3DMXRA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300938   
Orphanet
MedgenMXRA5
Genetic Testing Registry MXRA5
NextProtQ9NR99 [Medical]
TSGene25878
GENETestsMXRA5
Target ValidationMXRA5
Huge Navigator MXRA5 [HugePedia]
snp3D : Map Gene to Disease25878
BioCentury BCIQMXRA5
ClinGenMXRA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25878
Chemical/Pharm GKB GenePA31340
Clinical trialMXRA5
Miscellaneous
canSAR (ICR)MXRA5 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMXRA5
EVEXMXRA5
GoPubMedMXRA5
iHOPMXRA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:20:58 CEST 2017

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