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MXRA7 (matrix remodeling associated 7)

Identity

Alias_namesmatrix-remodelling associated 7
Alias_symbol (synonym)FLJ46603
TMAP1
PS1TP1
Other alias
HGNC (Hugo) MXRA7
LocusID (NCBI) 439921
Atlas_Id 70593
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 76673650 and ends at 76711005 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC88C (14q32.11) / MXRA7 (17q25.1)RAI1 (17p11.2) / MXRA7 (17q25.1)RPL7L1 (6p21.1) / MXRA7 (17q25.1)
SUMO2 (17q25.1) / MXRA7 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MXRA7   7541
Cards
Entrez_Gene (NCBI)MXRA7  439921  matrix remodeling associated 7
AliasesPS1TP1; TMAP1
GeneCards (Weizmann)MXRA7
Ensembl hg19 (Hinxton)ENSG00000182534 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182534 [Gene_View]  chr17:76673650-76711005 [Contig_View]  MXRA7 [Vega]
ICGC DataPortalENSG00000182534
TCGA cBioPortalMXRA7
AceView (NCBI)MXRA7
Genatlas (Paris)MXRA7
WikiGenes439921
SOURCE (Princeton)MXRA7
Genetics Home Reference (NIH)MXRA7
Genomic and cartography
GoldenPath hg38 (UCSC)MXRA7  -     chr17:76673650-76711005 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MXRA7  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblMXRA7 - 17q25.1 [CytoView hg19]  MXRA7 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIMXRA7 [Mapview hg19]  MXRA7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097108 AK123486 AK127801 AK128460 AL046940
RefSeq transcript (Entrez)NM_001008528 NM_001008529 NM_198530
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MXRA7
Cluster EST : UnigeneHs.655266 [ NCBI ]
CGAP (NCI)Hs.655266
Alternative Splicing GalleryENSG00000182534
Gene ExpressionMXRA7 [ NCBI-GEO ]   MXRA7 [ EBI - ARRAY_EXPRESS ]   MXRA7 [ SEEK ]   MXRA7 [ MEM ]
Gene Expression Viewer (FireBrowse)MXRA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)439921
GTEX Portal (Tissue expression)MXRA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP84157   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP84157  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP84157
Splice isoforms : SwissVarP84157
PhosPhoSitePlusP84157
Domains : Interpro (EBI)Mxra7   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MXRA7
DMDM Disease mutations439921
Blocks (Seattle)MXRA7
SuperfamilyP84157
Human Protein AtlasENSG00000182534
Peptide AtlasP84157
HPRD18199
IPIIPI00465377   IPI00397645   IPI00514725   IPI01013723   IPI00747319   IPI00749188   
Protein Interaction databases
DIP (DOE-UCLA)P84157
IntAct (EBI)P84157
FunCoupENSG00000182534
BioGRIDMXRA7
STRING (EMBL)MXRA7
ZODIACMXRA7
Ontologies - Pathways
QuickGOP84157
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMXRA7
Atlas of Cancer Signalling NetworkMXRA7
Wikipedia pathwaysMXRA7
Orthology - Evolution
OrthoDB439921
GeneTree (enSembl)ENSG00000182534
Phylogenetic Trees/Animal Genes : TreeFamMXRA7
HOVERGENP84157
HOGENOMP84157
Homologs : HomoloGeneMXRA7
Homology/Alignments : Family Browser (UCSC)MXRA7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMXRA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MXRA7
dbVarMXRA7
ClinVarMXRA7
1000_GenomesMXRA7 
Exome Variant ServerMXRA7
ExAC (Exome Aggregation Consortium)MXRA7 (select the gene name)
Genetic variants : HAPMAP439921
Genomic Variants (DGV)MXRA7 [DGVbeta]
DECIPHERMXRA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMXRA7 
Mutations
ICGC Data PortalMXRA7 
TCGA Data PortalMXRA7 
Broad Tumor PortalMXRA7
OASIS PortalMXRA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMXRA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMXRA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MXRA7
DgiDB (Drug Gene Interaction Database)MXRA7
DoCM (Curated mutations)MXRA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MXRA7 (select a term)
intoGenMXRA7
Cancer3DMXRA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMXRA7
Genetic Testing Registry MXRA7
NextProtP84157 [Medical]
TSGene439921
GENETestsMXRA7
Target ValidationMXRA7
Huge Navigator MXRA7 [HugePedia]
snp3D : Map Gene to Disease439921
BioCentury BCIQMXRA7
ClinGenMXRA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD439921
Chemical/Pharm GKB GenePA31342
Clinical trialMXRA7
Miscellaneous
canSAR (ICR)MXRA7 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMXRA7
EVEXMXRA7
GoPubMedMXRA7
iHOPMXRA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:31:32 CEST 2017

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