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MXRA8 (matrix remodeling associated 8)

Identity

Alias (NCBI)ASP3
HGNC (Hugo) MXRA8
HGNC Alias symbDKFZp586E2023
HGNC Alias namelimitrin
HGNC Previous namematrix-remodelling associated 8
LocusID (NCBI) 54587
Atlas_Id 70594
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1352691 and ends at 1358555 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MXRA8 (1p36.33) / DDX27 (20q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MXRA8   7542
Cards
Entrez_Gene (NCBI)MXRA8    matrix remodeling associated 8
AliasesASP3
GeneCards (Weizmann)MXRA8
Ensembl hg19 (Hinxton)ENSG00000162576 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162576 [Gene_View]  ENSG00000162576 [Sequence]  chr1:1352691-1358555 [Contig_View]  MXRA8 [Vega]
ICGC DataPortalENSG00000162576
TCGA cBioPortalMXRA8
AceView (NCBI)MXRA8
Genatlas (Paris)MXRA8
SOURCE (Princeton)MXRA8
Genetics Home Reference (NIH)MXRA8
Genomic and cartography
GoldenPath hg38 (UCSC)MXRA8  -     chr1:1352691-1358555 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MXRA8  -     1p36.33   [Description]    (hg19-Feb_2009)
GoldenPathMXRA8 - 1p36.33 [CytoView hg19]  MXRA8 - 1p36.33 [CytoView hg38]
ImmunoBaseENSG00000162576
Genome Data Viewer NCBIMXRA8 [Mapview hg19]  
OMIM617293   
Gene and transcription
Genbank (Entrez)AB052096 AK027269 AK095966 AK225028 AK293442
RefSeq transcript (Entrez)NM_001282582 NM_001282583 NM_001282584 NM_001282585 NM_032348
Consensus coding sequences : CCDS (NCBI)MXRA8
Gene ExpressionMXRA8 [ NCBI-GEO ]   MXRA8 [ EBI - ARRAY_EXPRESS ]   MXRA8 [ SEEK ]   MXRA8 [ MEM ]
Gene Expression Viewer (FireBrowse)MXRA8 [ Firebrowse - Broad ]
GenevisibleExpression of MXRA8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54587
GTEX Portal (Tissue expression)MXRA8
Human Protein AtlasENSG00000162576-MXRA8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRK3
PhosPhoSitePlusQ9BRK3
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set    MXRA8   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  
Conserved Domain (NCBI)MXRA8
PDB (RSDB)6JO8   
PDB Europe6JO8   
PDB (PDBSum)6JO8   
PDB (IMB)6JO8   
Structural Biology KnowledgeBase6JO8   
SCOP (Structural Classification of Proteins)6JO8   
CATH (Classification of proteins structures)6JO8   
SuperfamilyQ9BRK3
AlphaFold pdb e-kbQ9BRK3   
Human Protein Atlas [tissue]ENSG00000162576-MXRA8 [tissue]
HPRD11330
Protein Interaction databases
DIP (DOE-UCLA)Q9BRK3
IntAct (EBI)Q9BRK3
BioGRIDMXRA8
STRING (EMBL)MXRA8
ZODIACMXRA8
Ontologies - Pathways
QuickGOQ9BRK3
Ontology : AmiGOmolecular_function  protein binding  nucleus  endoplasmic reticulum lumen  bicellular tight junction  cell adhesion  cell surface  integral component of membrane  post-translational protein modification  cellular protein metabolic process  ciliary membrane  establishment of glial blood-brain barrier  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  endoplasmic reticulum lumen  bicellular tight junction  cell adhesion  cell surface  integral component of membrane  post-translational protein modification  cellular protein metabolic process  ciliary membrane  establishment of glial blood-brain barrier  extracellular exosome  
NDEx NetworkMXRA8
Atlas of Cancer Signalling NetworkMXRA8
Wikipedia pathwaysMXRA8
Orthology - Evolution
OrthoDB54587
GeneTree (enSembl)ENSG00000162576
Phylogenetic Trees/Animal Genes : TreeFamMXRA8
Homologs : HomoloGeneMXRA8
Homology/Alignments : Family Browser (UCSC)MXRA8
Gene fusions - Rearrangements
Fusion : QuiverMXRA8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMXRA8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MXRA8
dbVarMXRA8
ClinVarMXRA8
MonarchMXRA8
1000_GenomesMXRA8 
Exome Variant ServerMXRA8
GNOMAD BrowserENSG00000162576
Varsome BrowserMXRA8
ACMGMXRA8 variants
VarityQ9BRK3
Genomic Variants (DGV)MXRA8 [DGVbeta]
DECIPHERMXRA8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMXRA8 
Mutations
ICGC Data PortalMXRA8 
TCGA Data PortalMXRA8 
Broad Tumor PortalMXRA8
OASIS PortalMXRA8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMXRA8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMXRA8
Mutations and Diseases : HGMDMXRA8
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMXRA8
DgiDB (Drug Gene Interaction Database)MXRA8
DoCM (Curated mutations)MXRA8
CIViC (Clinical Interpretations of Variants in Cancer)MXRA8
Cancer3DMXRA8
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617293   
Orphanet
DisGeNETMXRA8
MedgenMXRA8
Genetic Testing Registry MXRA8
NextProtQ9BRK3 [Medical]
GENETestsMXRA8
Target ValidationMXRA8
Huge Navigator MXRA8 [HugePedia]
ClinGenMXRA8
Clinical trials, drugs, therapy
MyCancerGenomeMXRA8
Protein Interactions : CTDMXRA8
Pharm GKB GenePA31343
PharosQ9BRK3
Clinical trialMXRA8
Miscellaneous
canSAR (ICR)MXRA8
HarmonizomeMXRA8
DataMed IndexMXRA8
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMXRA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:12:06 CEST 2021

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