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MXRA8 (matrix remodeling associated 8)

Identity

Alias_namesmatrix-remodelling associated 8
Alias_symbol (synonym)DKFZp586E2023
Other aliasASP3
HGNC (Hugo) MXRA8
LocusID (NCBI) 54587
Atlas_Id 70594
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1352689 and ends at 1363541 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MXRA8 (1p36.33) / DDX27 (20q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MXRA8   7542
Cards
Entrez_Gene (NCBI)MXRA8  54587  matrix remodeling associated 8
AliasesASP3
GeneCards (Weizmann)MXRA8
Ensembl hg19 (Hinxton)ENSG00000162576 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162576 [Gene_View]  chr1:1352689-1363541 [Contig_View]  MXRA8 [Vega]
ICGC DataPortalENSG00000162576
TCGA cBioPortalMXRA8
AceView (NCBI)MXRA8
Genatlas (Paris)MXRA8
WikiGenes54587
SOURCE (Princeton)MXRA8
Genetics Home Reference (NIH)MXRA8
Genomic and cartography
GoldenPath hg38 (UCSC)MXRA8  -     chr1:1352689-1363541 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MXRA8  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblMXRA8 - 1p36.33 [CytoView hg19]  MXRA8 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIMXRA8 [Mapview hg19]  MXRA8 [Mapview hg38]
OMIM617293   
Gene and transcription
Genbank (Entrez)AB052096 AK027269 AK095966 AK225028 AK293442
RefSeq transcript (Entrez)NM_001282582 NM_001282583 NM_001282584 NM_001282585 NM_032348
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MXRA8
Cluster EST : UnigeneHs.515687 [ NCBI ]
CGAP (NCI)Hs.515687
Alternative Splicing GalleryENSG00000162576
Gene ExpressionMXRA8 [ NCBI-GEO ]   MXRA8 [ EBI - ARRAY_EXPRESS ]   MXRA8 [ SEEK ]   MXRA8 [ MEM ]
Gene Expression Viewer (FireBrowse)MXRA8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54587
GTEX Portal (Tissue expression)MXRA8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRK3
Splice isoforms : SwissVarQ9BRK3
PhosPhoSitePlusQ9BRK3
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGv (SM00406)  
Conserved Domain (NCBI)MXRA8
DMDM Disease mutations54587
Blocks (Seattle)MXRA8
SuperfamilyQ9BRK3
Human Protein AtlasENSG00000162576
Peptide AtlasQ9BRK3
HPRD11330
IPIIPI00550854   IPI00153049   IPI00910922   IPI00909135   IPI00884085   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRK3
IntAct (EBI)Q9BRK3
FunCoupENSG00000162576
BioGRIDMXRA8
STRING (EMBL)MXRA8
ZODIACMXRA8
Ontologies - Pathways
QuickGOQ9BRK3
Ontology : AmiGOmolecular_function  cell surface  integral component of membrane  establishment of glial blood-brain barrier  extracellular exosome  
Ontology : EGO-EBImolecular_function  cell surface  integral component of membrane  establishment of glial blood-brain barrier  extracellular exosome  
NDEx NetworkMXRA8
Atlas of Cancer Signalling NetworkMXRA8
Wikipedia pathwaysMXRA8
Orthology - Evolution
OrthoDB54587
GeneTree (enSembl)ENSG00000162576
Phylogenetic Trees/Animal Genes : TreeFamMXRA8
HOVERGENQ9BRK3
HOGENOMQ9BRK3
Homologs : HomoloGeneMXRA8
Homology/Alignments : Family Browser (UCSC)MXRA8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMXRA8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MXRA8
dbVarMXRA8
ClinVarMXRA8
1000_GenomesMXRA8 
Exome Variant ServerMXRA8
ExAC (Exome Aggregation Consortium)MXRA8 (select the gene name)
Genetic variants : HAPMAP54587
Genomic Variants (DGV)MXRA8 [DGVbeta]
DECIPHERMXRA8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMXRA8 
Mutations
ICGC Data PortalMXRA8 
TCGA Data PortalMXRA8 
Broad Tumor PortalMXRA8
OASIS PortalMXRA8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMXRA8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMXRA8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MXRA8
DgiDB (Drug Gene Interaction Database)MXRA8
DoCM (Curated mutations)MXRA8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MXRA8 (select a term)
intoGenMXRA8
Cancer3DMXRA8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617293   
Orphanet
MedgenMXRA8
Genetic Testing Registry MXRA8
NextProtQ9BRK3 [Medical]
TSGene54587
GENETestsMXRA8
Target ValidationMXRA8
Huge Navigator MXRA8 [HugePedia]
snp3D : Map Gene to Disease54587
BioCentury BCIQMXRA8
ClinGenMXRA8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54587
Chemical/Pharm GKB GenePA31343
Clinical trialMXRA8
Miscellaneous
canSAR (ICR)MXRA8 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMXRA8
EVEXMXRA8
GoPubMedMXRA8
iHOPMXRA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:31:58 CEST 2017

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