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MYBPC2 (myosin binding protein C, fast type)

Identity

Alias_namesmyosin-binding protein C, fast-type
Alias_symbol (synonym)MYBPCF
MYBPC
MGC163408
Other alias
HGNC (Hugo) MYBPC2
LocusID (NCBI) 4606
Atlas_Id 70598
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50936160 and ends at 50969583 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MYBPC2 (19q13.33) / MYBPC2 (19q13.33)MYBPC2 (19q13.33) / PTGDS (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MYBPC2   7550
Cards
Entrez_Gene (NCBI)MYBPC2  4606  myosin binding protein C, fast type
AliasesMYBPC; MYBPCF
GeneCards (Weizmann)MYBPC2
Ensembl hg19 (Hinxton)ENSG00000086967 [Gene_View]  chr19:50936160-50969583 [Contig_View]  MYBPC2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000086967 [Gene_View]  chr19:50936160-50969583 [Contig_View]  MYBPC2 [Vega]
ICGC DataPortalENSG00000086967
TCGA cBioPortalMYBPC2
AceView (NCBI)MYBPC2
Genatlas (Paris)MYBPC2
WikiGenes4606
SOURCE (Princeton)MYBPC2
Genetics Home Reference (NIH)MYBPC2
Genomic and cartography
GoldenPath hg19 (UCSC)MYBPC2  -     chr19:50936160-50969583 +  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MYBPC2  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblMYBPC2 - 19q13.33 [CytoView hg19]  MYBPC2 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIMYBPC2 [Mapview hg19]  MYBPC2 [Mapview hg38]
OMIM160793   
Gene and transcription
Genbank (Entrez)AA086285 BC130536 BC136389 CF552888 CF553029
RefSeq transcript (Entrez)NM_004533
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_028026 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)MYBPC2
Cluster EST : UnigeneHs.85937 [ NCBI ]
CGAP (NCI)Hs.85937
Alternative Splicing GalleryENSG00000086967
Gene ExpressionMYBPC2 [ NCBI-GEO ]   MYBPC2 [ EBI - ARRAY_EXPRESS ]   MYBPC2 [ SEEK ]   MYBPC2 [ MEM ]
Gene Expression Viewer (FireBrowse)MYBPC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4606
GTEX Portal (Tissue expression)MYBPC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14324   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14324  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14324
Splice isoforms : SwissVarQ14324
PhosPhoSitePlusQ14324
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam00041    pfam07679   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)MYBPC2
DMDM Disease mutations4606
Blocks (Seattle)MYBPC2
PDB (SRS)2E7C    2EDK    2EDN   
PDB (PDBSum)2E7C    2EDK    2EDN   
PDB (IMB)2E7C    2EDK    2EDN   
PDB (RSDB)2E7C    2EDK    2EDN   
Structural Biology KnowledgeBase2E7C    2EDK    2EDN   
SCOP (Structural Classification of Proteins)2E7C    2EDK    2EDN   
CATH (Classification of proteins structures)2E7C    2EDK    2EDN   
SuperfamilyQ14324
Human Protein AtlasENSG00000086967
Peptide AtlasQ14324
HPRD01184
IPIIPI00030104   
Protein Interaction databases
DIP (DOE-UCLA)Q14324
IntAct (EBI)Q14324
FunCoupENSG00000086967
BioGRIDMYBPC2
STRING (EMBL)MYBPC2
ZODIACMYBPC2
Ontologies - Pathways
QuickGOQ14324
Ontology : AmiGOactin binding  protein binding  cytosol  cell adhesion  structural constituent of muscle  muscle filament sliding  myosin filament  
Ontology : EGO-EBIactin binding  protein binding  cytosol  cell adhesion  structural constituent of muscle  muscle filament sliding  myosin filament  
NDEx NetworkMYBPC2
Atlas of Cancer Signalling NetworkMYBPC2
Wikipedia pathwaysMYBPC2
Orthology - Evolution
OrthoDB4606
GeneTree (enSembl)ENSG00000086967
Phylogenetic Trees/Animal Genes : TreeFamMYBPC2
HOVERGENQ14324
HOGENOMQ14324
Homologs : HomoloGeneMYBPC2
Homology/Alignments : Family Browser (UCSC)MYBPC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMYBPC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MYBPC2
dbVarMYBPC2
ClinVarMYBPC2
1000_GenomesMYBPC2 
Exome Variant ServerMYBPC2
ExAC (Exome Aggregation Consortium)MYBPC2 (select the gene name)
Genetic variants : HAPMAP4606
Genomic Variants (DGV)MYBPC2 [DGVbeta]
DECIPHER (Syndromes)19:50936160-50969583  ENSG00000086967
CONAN: Copy Number AnalysisMYBPC2 
Mutations
ICGC Data PortalMYBPC2 
TCGA Data PortalMYBPC2 
Broad Tumor PortalMYBPC2
OASIS PortalMYBPC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMYBPC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMYBPC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MYBPC2
DgiDB (Drug Gene Interaction Database)MYBPC2
DoCM (Curated mutations)MYBPC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MYBPC2 (select a term)
intoGenMYBPC2
Cancer3DMYBPC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM160793   
Orphanet
MedgenMYBPC2
Genetic Testing Registry MYBPC2
NextProtQ14324 [Medical]
TSGene4606
GENETestsMYBPC2
Huge Navigator MYBPC2 [HugePedia]
snp3D : Map Gene to Disease4606
BioCentury BCIQMYBPC2
ClinGenMYBPC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4606
Chemical/Pharm GKB GenePA31350
Clinical trialMYBPC2
Miscellaneous
canSAR (ICR)MYBPC2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMYBPC2
EVEXMYBPC2
GoPubMedMYBPC2
iHOPMYBPC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:34:13 CET 2017

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